Vitis vinifera (wine grape): 100245502
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Entry
100245502 CDS
T01084
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03410
Base excision repair
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100245502
03410 Base excision repair
100245502
03420 Nucleotide excision repair
100245502
03430 Mismatch repair
100245502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvi03032
]
100245502
03036 Chromosome and associated proteins [BR:
vvi03036
]
100245502
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100245502
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100245502
DNA Replication Termination Factors
ELG1-RFC complex
100245502
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100245502
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100245502
Check point factors
HRAD17(Rad24)-RFC complex
100245502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
AAA_24
Mg_chelatase
AAA_11
AAA_5
AAA_14
AAA_assoc_2
AAA_2
ResIII
SLFN-g3_helicase
nSTAND3
PhoH
AAA_28
AAA_19
AAA_30
AAA_7
DNAX_ATPase_lid
AAA_18
AAA_25
CPG4
RNA_helicase
Parvo_NS1
NPHP3_N
IstB_IS21
TIP49_C
bpMoxR
DUF815
TIP49
NB-ARC
Motif
Other DBs
NCBI-GeneID:
100245502
NCBI-ProteinID:
XP_002285874
UniProt:
E0CR30
LinkDB
All DBs
Position
18:join(2519606..2519649,2519741..2519819,2520004..2520083,2522778..2522900,2522991..2523060,2523156..2523229,2523675..2523795,2523961..2524023,2524733..2524792,2525145..2525270,2525345..2525425,2525867..2525971)
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AA seq
341 aa
AA seq
DB search
MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV
PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICK
RLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcaccagtgttgcagagctctcagccatgggtggaaaaatatcgcccgaagcaagtg
aaggacgtagctcaccaggacgaggtggttcgagtgcttaccaacacccttgagaccaca
aattgcccgcacatgctattctatgggccgcccggtaccggaaaaaccaccactgcgctt
gccattgctcatcagcttttcggacctgaactctacaagtcgagggtgcttgaactgaat
gcaagtgatgaccgtgggatcaatgtagttcgtacaaagatcaaagattttgctgccgtt
gctgtaggatctggtcaccggcaagggggttatccttgtccaccttacaagattatcatc
ttagatgaggctgattcaatgactgaagatgcccagaatgctttgagacgaacaatggaa
acatactccaaagttacaagattctttttcatttgtaactacattagcagaattatagaa
ccacttgcttctagatgtgcgaagtttaggttcaagccactttcagaagaaatcatgagc
agccggatattgcatatttgtaaagaagaagagctcaatctggattcagaggctctctca
accttaagttctatctcacaaggtgatcttcgtcgggcgataacttacttgcagggagct
gctcgcttatttggatcaattatttcttccaaggacctaatcagtgtatctggggttgtt
cctcagcatgttgttcaggctctttttgcagcttgcaaaagtggtgattttgattcagca
aataaggaagtcaataatgtcattgcagagggatatccggtttctcagatgctttatcag
ttatttgatgtagttgttgaagcagatatatcagatgaacagaaagcaagaatttgcaag
agattggctgaggcagataagtgtcttgttgatggagcagatgagtatctgcagctgctg
gatgttgccagcaatgcaatgcgagctctttgcaacatgccagaagaattccctcatgag
agctag
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