KEGG   Vitis vinifera (wine grape): 100245502
Entry
100245502         CDS       T01084                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03410  Base excision repair
vvi03420  Nucleotide excision repair
vvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100245502
   03410 Base excision repair
    100245502
   03420 Nucleotide excision repair
    100245502
   03430 Mismatch repair
    100245502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100245502
   03036 Chromosome and associated proteins [BR:vvi03036]
    100245502
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100245502
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100245502
  DNA Replication Termination Factors
   ELG1-RFC complex
    100245502
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100245502
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100245502
  Check point factors
   HRAD17(Rad24)-RFC complex
    100245502
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 AAA_24 Mg_chelatase AAA_11 AAA_5 AAA_14 AAA_assoc_2 AAA_2 ResIII SLFN-g3_helicase nSTAND3 PhoH AAA_28 AAA_19 AAA_30 AAA_7 DNAX_ATPase_lid AAA_18 AAA_25 CPG4 RNA_helicase Parvo_NS1 NPHP3_N IstB_IS21 TIP49_C bpMoxR DUF815 TIP49 NB-ARC
Other DBs
NCBI-GeneID: 100245502
NCBI-ProteinID: XP_002285874
UniProt: E0CR30
LinkDB
Position
18:join(2519606..2519649,2519741..2519819,2520004..2520083,2522778..2522900,2522991..2523060,2523156..2523229,2523675..2523795,2523961..2524023,2524733..2524792,2525145..2525270,2525345..2525425,2525867..2525971)
AA seq 341 aa
MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV
PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICK
RLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcaccagtgttgcagagctctcagccatgggtggaaaaatatcgcccgaagcaagtg
aaggacgtagctcaccaggacgaggtggttcgagtgcttaccaacacccttgagaccaca
aattgcccgcacatgctattctatgggccgcccggtaccggaaaaaccaccactgcgctt
gccattgctcatcagcttttcggacctgaactctacaagtcgagggtgcttgaactgaat
gcaagtgatgaccgtgggatcaatgtagttcgtacaaagatcaaagattttgctgccgtt
gctgtaggatctggtcaccggcaagggggttatccttgtccaccttacaagattatcatc
ttagatgaggctgattcaatgactgaagatgcccagaatgctttgagacgaacaatggaa
acatactccaaagttacaagattctttttcatttgtaactacattagcagaattatagaa
ccacttgcttctagatgtgcgaagtttaggttcaagccactttcagaagaaatcatgagc
agccggatattgcatatttgtaaagaagaagagctcaatctggattcagaggctctctca
accttaagttctatctcacaaggtgatcttcgtcgggcgataacttacttgcagggagct
gctcgcttatttggatcaattatttcttccaaggacctaatcagtgtatctggggttgtt
cctcagcatgttgttcaggctctttttgcagcttgcaaaagtggtgattttgattcagca
aataaggaagtcaataatgtcattgcagagggatatccggtttctcagatgctttatcag
ttatttgatgtagttgttgaagcagatatatcagatgaacagaaagcaagaatttgcaag
agattggctgaggcagataagtgtcttgttgatggagcagatgagtatctgcagctgctg
gatgttgccagcaatgcaatgcgagctctttgcaacatgccagaagaattccctcatgag
agctag

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