Vitis vinifera (wine grape): 100245725
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Entry
100245725 CDS
T01084
Name
(RefSeq) replication protein A 32 kDa subunit A
KO
K10739
replication factor A2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
vvi03440
Homologous recombination
vvi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100245725
03420 Nucleotide excision repair
100245725
03430 Mismatch repair
100245725
03440 Homologous recombination
100245725
03460 Fanconi anemia pathway
100245725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvi03032
]
100245725
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100245725
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100245725
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100245725
MMR (mismatch excision repair)
100245725
DSBR (double strand breaks repair)
HR (homologous recombination)
100245725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPA_C
tRNA_anti-codon
DDRGK
HTH_24
B-block_TFIIIC
MCM_WH_arc
GntR
HTH_11
RMI2
HTH_27
NirdL-like_HTH
TrmB
HTH_Crp_2
HTH_5
Motif
Other DBs
NCBI-GeneID:
100245725
NCBI-ProteinID:
XP_002282796
UniProt:
D7SU26
LinkDB
All DBs
Position
4:join(2125745..2125831,2126078..2126188,2126537..2126634,2126893..2126934,2127053..2127130,2127734..2127812,2127907..2127987,2128083..2128159,2128341..2128409,2128491..2128575)
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AA seq
268 aa
AA seq
DB search
MQMFSSQFDPFSGGFSSSQSTDSGVSSAKSRETQGLIPVTVKQISEASHSGDDKSNFQID
GVDVTNITLVGMVFDKSERVTDVSFALDDGTGRIECKRWVNEAFDTREMENISDGIYVRL
NGHLRSSGGNRQLVAFSVRPVTNFDEIAFHFIEVIHLHLKNSKTRLPSDALTQPLSASVK
TESTGYQTPSSQLSAQSVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQLKISTEKI
MESIRTLEEEGLIYSTIDEFHYKSTTSG
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgttctccagccagttcgatcccttctccggtggattctcgtcatctcagtca
actgattccggcgtttcgtcggccaaaagtcgtgaaactcaaggattgatcccagtgaca
gtgaagcagatcagtgaagcttctcattccggtgatgataaatccaatttccaaatcgac
ggtgtggatgttaccaatattacattggttggaatggtgttcgataaatctgaaagggtt
actgatgtttctttcgctctcgatgatggtacaggccgaatagagtgtaaaagatgggtg
aatgaagcttttgacacaagggaaatggagaacataagtgatggaatttatgttcgtctt
aatggacacctaagaagttctggaggcaacaggcaattggttgccttttcagtgaggcct
gtgacaaattttgatgagattgccttccactttattgaggtcatacatctccatctgaag
aattccaaaacacggctgccaagtgatgccctgactcagcctttgagtgcctctgtgaag
accgaatcaactggatatcaaaccccatcaagtcagttatctgcccaaagtgttgatgga
gtcaaaggactcgaccaaatggttcttgactacctgcagcaaccttcaaactatgatcga
gaaaagggcatacacagggatgaactttcccagcagctgaaaatttctactgaaaagatc
atggaatccatcagaactcttgaagaggaagggttgatctactccacaattgatgaattt
cactacaagtcaaccacgagtggatga
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