KEGG   Vitis vinifera (wine grape): 100245820
Entry
100245820         CDS       T01084                                 
Name
(RefSeq) ubiquitin receptor RAD23c isoform X2
  KO
K10839  UV excision repair protein RAD23
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03420  Nucleotide excision repair
vvi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100245820
  09124 Replication and repair
   03420 Nucleotide excision repair
    100245820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:vvi03051]
    100245820
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100245820
Proteasome [BR:vvi03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    100245820
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      100245820
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin UBA_7 Rad60-SLD UBA_RAD5A CUE Rad60-SLD_2 NQRA_N Dsc3_N TECR_N UBA_3 Ubiquitin_2 SIP1 Ubiquitin_5 Ubiquitin_4
Other DBs
NCBI-GeneID: 100245820
NCBI-ProteinID: XP_002282352
UniProt: D7T959
LinkDB
Position
1:complement(join(3042625..3042741,3043152..3043230,3043309..3043418,3043499..3043546,3043727..3043795,3043871..3044014,3045038..3045215,3045359..3045418,3045545..3045624,3046475..3046555,3048910..3049071,3050682..3050747))
AA seq 397 aa
MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD
ENKVAENSFVVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLTA
PQAPVVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDMG
GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQPV
PAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQ
ELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIARL
EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgaagattttcgtcaagactttgaaaggaactcacttcgaaatccaagtgaaacctgaa
gatacagttgctgatgtgaaggcaaatatagaggcagttcaaggatcagatgtttatcct
gcttcacaacagatgcttatccatcaaggaaaggttcttaaggatggcacaacattggat
gaaaacaaagttgctgaaaatagttttgtagttgtcatgttatcaaagaataagaactca
tctgaaggttcaaccgcatcaactgcacctgcacctgcacctgcacctgcacctacacct
atagttaaggctccatctgcaagtgcccctcctccaactacaacttcaacattaacagca
cctcaagctcctgtagtagccttgccaccgcctgcaaccgtacctgcccctgctccagct
gcaactccagcatctacagtcactgttgtatctgagactgatgcctatggccaagcagct
tcaaatctagttgcaggaaacaattttgaggaagctatccaacaaattcttgatatgggg
ggagggacttgggacagggacactgttgtccgtgctcttcgtgctgcatataataaccca
gagcgtgcagttgaatatctatattctggtatccctgagcaagctgaagttccacctgtg
gctcgtgcccctgccagtgggcaagctgcaaatcctccagcccaatctcagcaaccagta
cctgctccttcaagtgggcccaatgcaaatccattagatcttttcccccagggcattccc
aatgtgggttcaaatcctgctggtgcagggaccttggattttcttcgcaacagccaacaa
ttccaagctttgcgagctatggtgcaagctaatccacaaatcttgcagcctatgcttcaa
gagcttggaaaacaaaatcctcagctaatgaggcttattcaagaacatcaggctgatttc
cttcgccttatcaatgaacctgtagaagggggagaggggaacatactagggcagcttgct
gcagcaatgccacaggcagtgacagtgacgccggaggaacgggaagccatagctcgtctt
gaagcaatgggttttgaccgtgccctggtgttggaggtgttctttgcctgcaacaagaat
gaggagctggctgccaactatcttttagaccacatgcatgagttcgaggattga

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