KEGG   Vitis vinifera (wine grape): 100245855
Entry
100245855         CDS       T01084                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100245855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100245855
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100245855
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   Step II factors
    100245855
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N DEAD AAA_22 HA2_C AAA_19 nSTAND3 AAA_30 ABC_tran Helicase_RecD AAA_16 NPHP3_N SLFN-g3_helicase AAA_29 AAA_23 ATPase_2 NACHT FtsK_SpoIIIE T2SSE Sigma54_activat SMC_N Flavi_DEAD AAA_18
Other DBs
NCBI-GeneID: 100245855
NCBI-ProteinID: XP_059598783
LinkDB
Position
1:complement(join(24556024..24556174,24556301..24556476,24556779..24556939,24557700..24557769,24558120..24558267,24562850..24562973,24564440..24564532,24564645..24564859,24564973..24565059,24565989..24566080,24566976..24567092,24567219..24567271,24567753..24567970,24568123..24568227,24568326..24568418,24572666..24572865))
AA seq 700 aa
MAKLPILQFEEKIIDIVEQNSVVVIIGETGSGKSTQLSQILYRRGYTNSGNVAVTQPRRV
AAVSVARRVAQELGVQLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPDLSQYSV
IILDEAHERSLNTDILLGLMKRLVKMRASNLKVLITSATLDGSKVSRFFSNCPILTVPGK
LFPVEILYSAELPKSYIESSLKTAIDIHVREPEGDVLIFMTGQDDIEKLVVKLEERVRSL
EEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPLTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYHDDFLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALRQLYLIDAIDENGSITSVG
RTMAELPLESSLSRMLMEANECGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPTDL
PDGSGWGDHIQLLQIFEQWDQTDYDPNWCKDHGLQVRGMMFVKDVRKQLSQIMQKMARGS
LDVRAKERWKESRQDYKNLRKALCAGYAGQLAERMIHHNGYRTLGLKSQLVQVHPSSVLR
ADEDGMLPNYVLYHELVVTTRPYMRNVCAVEMSWVMPILKKLENLNINKLSGGSNQVEDR
TEEKSSDSPKKSVDVARPPNDAESRIQAARDRFMARKAKR
NT seq 2103 nt   +upstreamnt  +downstreamnt
atggcgaagcttccaattctacaattcgaggagaagatcatcgatatcgtggaacaaaac
tcagtggtagtaataatcggagagaccggttccggaaagagcactcagctttctcagatt
ttgtaccggcggggctacaccaattccggcaacgttgccgtcactcagccccggcgagtc
gccgcagtttccgtggcaaggcgggtagcacaggaactgggtgttcagcttggtgaggaa
gtgggttatgccattcgatttgaagatagaacttcagaaagaacacgtattaaatacctt
acggatggagtcctccttcgtgaaagtctttctaaccctgatctcagtcagtattctgta
attatattggatgaagctcatgaaagaagtctaaacacggacatattattgggactgatg
aaaagattggttaaaatgcgtgcctccaatttgaaggttctaatcacttccgccactctt
gatggtagcaaagtatcaagatttttctcaaactgccccatacttaccgtcccagggaaa
ttattccctgttgaaatattgtacagcgctgagcttcctaaaagctatatcgagtcttct
ttgaaaacagctattgatatacatgttcgggaaccagaaggtgatgttttaatattcatg
actgggcaggatgatatagagaagttggtagtgaagttggaggagagagtccgaagcttg
gaggaaggttcttgtatggatgccataatccttccccttcatggttctttaccacccgaa
ttgcaggtccgtgtattcagtcctccacctccaaattgcaggcgatttattgttgccaca
aacatagctgaaacttcattgactgttgatggtgttgtgtatgttattgattctggttat
gtgaagcagcggcaatacaacccattaactggcatgtattcccttgatgttgttcaaatt
agcaaggtacaagccaatcaacgtgcaggaagagccggaagaacacgtcctgggaagtgc
taccgattatacccatctatggtttaccatgatgacttcctggatgtaacagttcctgaa
atacagcgatcttctcttgctggaagtgttctttatttgaaatcattagatctccctgat
attgatattctcaaatttgattttcttgattccccttcctctgagtctctacaagatgct
ttaaggcaattatatctcattgatgctattgatgaaaatggatcaattacaagtgttgga
cgaacaatggctgagcttccactggaatcttcactctcaaggatgttaatggaggcaaat
gagtgtggttgcttgtcccaggctttgactgttgctgctatgttgtcagcagaaacaaca
ttgcttcctggtcgaagcaagagcactgagaagaaaaggaaacacactccaacagacctt
cctgatggttctggctggggtgatcacatccagttgctacagatctttgagcagtgggat
caaacagactatgatccaaattggtgcaaagatcatggtttgcaggtgcgaggaatgatg
tttgtcaaagatgttcggaaacagttgtctcagataatgcagaaaatggctagagggtcg
ttagatgtacgagccaaagaaagatggaaagaaagccgacaagactacaagaatttgagg
aaggctttgtgtgcaggctatgcaggtcagctcgctgagagaatgattcatcataatggc
tatagaactttaggattgaagtcccaactggttcaggtgcatccatcttctgtgctgaga
gcagacgaagatggaatgctcccaaactatgttttgtaccatgagctcgttgttaccaca
cgtccttacatgcgcaatgtgtgtgcagtagagatgtcatgggtcatgcccattttgaag
aaacttgagaacctaaatatcaacaaactcagtggtgggtccaatcaagttgaagacagg
actgaggagaaatcctcggactctccaaagaaatctgttgatgttgccaggcctcctaat
gacgctgaaagtagaatacaggcagcaagggatcgttttatggcccgtaaagcaaagaga
tag

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