Vitis vinifera (wine grape): 100245949
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Entry
100245949 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100245949 isoform X2
KO
K18735
protein SMG9
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100245949
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100245949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
AAA_18
ABC_tran
AAA_16
RsgA_GTPase
MeaB
AAA_22
DO-GTPase2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
100245949
NCBI-ProteinID:
XP_002274201
UniProt:
D7T7Q7
LinkDB
All DBs
Position
16:join(2171584..2171835,2172431..2172539,2176608..2176723,2178601..2178720,2179076..2179165,2180932..2181083,2183243..2183510,2183599..2183751)
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AA seq
419 aa
AA seq
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MAGATGGAGSSNPSPAPAPKILLAKPGLVTTGSVSSKLIRSGAAGGGGGGAEDESVSLRS
RLPPIGSLNLLSDSWEFHTDRFLPFLTDNTDFTVVGVIGPPGVGKSTIMNELYGFDGSSP
GMLPPFAIQSEDIRAMARHCTVGIEPRISAERLILLDTQPVFSPSVLAEMMRPDGSSTIS
VLGGESLSSELAHELMGIQLGVLLASICHILLVISDGVHDINMWRLMLTVDLLKHGIPDL
SSLTPSHSQNSNLGSDKEGKDKVLEGGEEYLAAPIFVHTKLRDQDITPRNFVHLRKALAQ
FFSSSTFVKEKCGNTTKEHLVSSVPPNMPSTDLDSTLPNLFLVPCKSKVDSPRAQYESYT
SMLWKLRDQVLSMNCPSFARTISERDWLRNSAKIWELVKNSPIIAEYCKTLQSSGMFRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgctaccggcggcgccggttcttccaatccctcaccggcgcctgcgccaaaa
atccttctagccaagcccggtttggtcactaccggttctgtctctagtaaactcatccgc
agcggcgctgccggtggcggcggtggcggcgcagaggacgagtcggtttcgctccgatcg
cggcttccgccgattggttctctcaatctcctctccgattcttgggagtttcacactgat
cggtttctcccttttttgactgataatacagattttacagtcgttggggtgattggtcca
ccgggggtggggaaatcaaccattatgaacgagctttatggctttgatggaagctcacct
ggaatgctaccaccttttgcaatccagtcggaggatattagagcaatggcaaggcactgt
acagttggcattgaaccaagaatttctgctgaacggcttatacttcttgatacccagcct
gtgtttagtccttctgttttagctgagatgatgaggcctgatggctcatctacaatttct
gttttaggcggagaatctctatcgtccgagttggctcatgaacttatgggtatacagctt
ggtgttctcctagcatccatttgccatattttgctggtgatatcagatggagtacatgat
attaacatgtggcgcttgatgttgacggttgacttgttaaaacatggtatacctgaccta
tcatcattaactccttcccattcacaaaactctaatttggggtctgacaaagaaggcaaa
gacaaagttctggaaggtggagaagaatacttggcagctcccatttttgtccatacaaaa
ctgcgagatcaagatatcactccgcgtaattttgttcatctgaggaaggcactcgcacaa
tttttcagctcctctacatttgtgaaagaaaaatgtggaaacacaaccaaggagcatctc
gtttcttctgtaccccctaatatgccgagtactgatttggattcaacactgccaaattta
tttttagtcccatgtaagagtaaagtcgattccccaagagctcagtatgaaagctatacc
tctatgttgtggaaattacgggatcaggttctgtccatgaactgcccatcctttgcaagg
accatatcagaacgtgactggctgaggaactctgccaagatatgggaactagtgaagaac
tctccgatcattgctgagtactgcaaaacacttcagagttctggtatgttcagaaggtaa
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