KEGG   Vitis vinifera (wine grape): 100246063
Entry
100246063         CDS       T01084                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi04120  Ubiquitin mediated proteolysis
vvi04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100246063
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    100246063
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vvi04121]
    100246063
Enzymes [BR:vvi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100246063
Ubiquitin system [BR:vvi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100246063
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100246063
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd zf-C3HC4_2 WD40_MABP1-WDR62_1st EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 Beta-prop_EML WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 WD40_like zf-C3HC4_3 zf-RING_UBOX zf-RING_2 Beta-prop_DCAF12 Beta-prop_WDR75_1st zf-C3HC4_4 Beta-prop_WDR35_TULP_N zf-RING_5 Beta-prop_SCAP U-box zf-Nse zf-rbx1 DUF1664 YbfN
Other DBs
NCBI-GeneID: 100246063
NCBI-ProteinID: XP_002270330
UniProt: A0A438C6M9
LinkDB
Position
10:complement(join(1870434..1870604,1870679..1870789,1870970..1871149,1871383..1871487,1872281..1872379,1872510..1872665,1873507..1873585,1873773..1873838,1874010..1874164,1874555..1874908,1875240..1875395,1876084..1876161,1878347..1878700))
AA seq 687 aa
MGDSSMGALVPTVKQPEPAGSSSEAVTAPPPPPPPEPAPEEQAEVPAVEAAETGVSEVDK
DLLCPICMQIIKDAFLTACGHSFCYMCIVTHLNNKNDCPCCGHFLTTNHLFPNFLLNKFL
RKTSARQIAKTATPFEHLRQALQQGCEVSVKELDSLMSLLVEKRRKMEQEEAETNMQILL
DFLHCLRKQKLEELNEIQTDLQYIKEDINAVERQRIDLYRSRERYSVKLRMLADDPIATK
AWPSLTDKHSSGIISSAHSTQGRMGAGSSQNKKADVKAQVSSHGLQRKDAYSGSDSHVTQ
SGLVVARKRLLHAQFNDLQDCYLQKRRHWVRQQHKQEERDTNSIREGYHAGLEDFQSVLT
TFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSSVVNEPA
DVHCPVVEMSTRSKLSCLSWNKYTKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWS
VDFSRTEPSMLVSGSDDCKVKIWCTKQEASVLNIDMKANICSVKYNPGSSIYVAVGSADH
HIHYYDLRNINQPLHVFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENMPVRTFRG
HSNEKNFVGLTVNSEYIACGSETNEVFAYHKAISKPAAWHRFGSSDLDDTDDDNGSYFIS
AVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgggggacagctcaatgggcgctctggtccccacagtgaagcagccggagcctgccgga
tcttcgtcggaggccgtgactgcaccacctccaccgccacctccggagccggcaccagag
gagcaggcagaggtccccgccgtggaggccgcggaaaccggagtcagcgaggttgacaag
gacttgctgtgtcctatctgcatgcagatcatcaaggacgcgtttctcacggcttgtggc
catagcttctgctacatgtgcattgtgactcatctcaacaacaagaacgattgtccctgc
tgtggtcacttcctcaccaccaaccatctcttccctaattttctcctcaataagttttta
aggaagacttctgctcgtcaaatagcgaaaactgcaactccttttgaacatcttcgccag
gcactacagcagggttgtgaagtgtcagttaaggagctagacagtctgatgtctctgctt
gtggagaagaggaggaaaatggagcaagaagaagctgagacaaatatgcagattctgctt
gatttcttgcattgtctaaggaagcaaaagcttgaagagctcaacgagatacaaactgat
cttcagtacattaaggaggacataaatgctgtagaaagacagagaatagatttatatcga
tcaagggaaagatactcagtgaaactgaggatgctggctgatgatcctattgcaacaaaa
gcatggccttcattgacggataagcatagtagtggaattatctctagtgcccatagtaca
caaggccggatgggtgcaggtagttcacagaacaagaaagctgatgtaaaggctcaagta
agttctcatggattacaaagaaaagatgcttatagtgggtcagattcacatgttactcaa
tcagggctggttgtagcaagaaaaagactgctccatgcacagttcaatgacctacaagat
tgttacttgcaaaaacggaggcattgggtgcggcaacaacataaacaggaagaaagggac
acaaattctattcgagaaggttatcatgcaggtcttgaggatttccaatctgtgctaact
acgtttacacgatatagtcggttgagagtcattgctgaacttaggcatggggatcttttt
cactctgccaatattgtgtcaagtatagaatttgatcgagatgatgaattgtttgctact
gctggagtttcacggcggatcaaagtttttgagttttcctctgtagtgaatgaaccagca
gatgtgcactgtccagttgtggaaatgtccacgcgatcaaaacttagttgcttgagttgg
aataagtacacaaagaaccatatagctagcagtgattatgaagggatagtaactgtttgg
gatgtaactactcgtcagagtgtgatggaatacgaggagcatgaaaagcgagcatggagt
gttgatttttcacgcactgaaccttcaatgcttgtatccggcagtgatgactgcaaggtc
aaaatttggtgcacaaagcaggaagctagcgttcttaacattgacatgaaagcaaatatt
tgttcggtcaagtataatcctggatctagcatttacgtcgcagtgggttctgcagatcat
cacattcactattatgacctgagaaatatcaaccaaccactgcatgtcttcagtgggcat
agaaaagctgtttcgtatgtgaaattcttatctaacaatgaacttgcttccgcatccact
gacagcacattgcgattgtgggacgtaaaggaaaatatgcctgttcgcacatttcgaggg
cattcaaatgagaagaattttgtgggtctcacagtaaacagcgaatacattgcctgtggc
agtgaaacaaacgaagtgttcgcgtatcacaaggccatctccaaacctgcagcttggcac
aggtttggttcatctgatttggatgatactgatgatgacaatggatcatatttcatcagt
gctgtgtgttggaagagcgatagcccaacaatgttgactgcaaatagccaaggaacgata
aaagtcctcgtcctcgctgcctga

DBGET integrated database retrieval system