Vitis vinifera (wine grape): 100246202
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Entry
100246202 CDS
T01084
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03410
Base excision repair
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100246202
03410 Base excision repair
100246202
03420 Nucleotide excision repair
100246202
03430 Mismatch repair
100246202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvi03032
]
100246202
03036 Chromosome and associated proteins [BR:
vvi03036
]
100246202
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100246202
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100246202
DNA Replication Termination Factors
ELG1-RFC complex
100246202
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100246202
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100246202
Check point factors
HRAD17(Rad24)-RFC complex
100246202
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
nSTAND_NTPase5
AAA_22
AAA_lid_RFC1
Rad17
AAA_16
RCF1-5-like_lid
Mg_chelatase
AAA_5
RuvB_N
nSTAND3
Viral_helicase1
AAA_11
AAA_assoc_2
AAA_19
MeaB
AAA_28
AAA_18
AAA_30
bpMoxR
AAA_25
DNAX_ATPase_lid
AAA_3
RNA_helicase
IstB_IS21
NTPase_1
KTI12
ABC_tran
SLFN-g3_helicase
AAA_29
NPHP3_N
DO-GTPase1
MipZ
AAA_7
AAA_24
T2SSE
DUF815
Motif
Other DBs
NCBI-GeneID:
100246202
NCBI-ProteinID:
XP_002283246
UniProt:
A0ABY9BHG4
D7TW50
LinkDB
All DBs
Position
2:complement(join(3496484..3496594,3496693..3496887,3496986..3497114,3499389..3499584,3499821..3499922,3500025..3500131,3500615..3500767))
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AA seq
330 aa
AA seq
DB search
MASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTT
SVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEAD
SMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMV
VVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK
NMVRNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
MRICDGVGSYLQLCGLLAKLAVVRETAKAF
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcgtcttcgatgagcaactacgacatgccatgggtggagaagtatagaccc
accaaagtagcagatattgttggcaacgaagataccgtctctaggctccaagtcatagct
cgcgatggcaatatgccaaatctgatcttatcgggccctcctggaactggcaaaaccacg
agtgtattggctcttgcacacgagcttttgggagcaaattacagggaggcggtattagag
ttaaatgcatcagatgacaggggcattgatgtagtgaggaacaaaatcaagatgtttgct
caaaagaaagtaacattgccttctgggagtcacaaaatagtcatattggatgaagctgac
agcatgacaactggagcgcaacaagcattgagacggacaatggaaatatattcaaattcc
actcgctttgcccttgcgtgcaatatctcctccaaaattattgagcctattcagagtaga
tgtgccattgttcgattttcaagattatctgatcaggagatccttggtcgactgatggtg
gtggttgaagcagagaaggttccttttgtcccggaaggtcttgaagcaatcatctttact
gctgatggtgatatgaggcaagcattaaataacttgcaagctacatacagcggattccgg
tttgtcaaccaagaaaatgtttttaaggtctgtgaccaacctcatcctttgcatgtgaag
aatatggtccgtaatgtacttgaggggaaatttgatgatgcttgttatggattgaagcag
ctgtatgatcttggttattcccccactgacataatcacaacccttttccgaatcattaaa
aattatgacatggctgaatacctgaaattagaattcatgaaggaaactggcttcgcccat
atgagaatctgtgatggagttggttcgtatcttcagctatgcggtctccttgccaagctt
gctgttgttagggaaacagcaaaagcattttga
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