KEGG   Vitis vinifera (wine grape): 100246530
Entry
100246530         CDS       T01084                                 
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03410  Base excision repair
vvi03420  Nucleotide excision repair
vvi03430  Mismatch repair
vvi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100246530
   03410 Base excision repair
    100246530
   03420 Nucleotide excision repair
    100246530
   03430 Mismatch repair
    100246530
   03440 Homologous recombination
    100246530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100246530
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100246530
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     100246530
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    100246530
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      100246530
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     100246530
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol POL3_N DNA_pol_B_2 REV3_N divDNApol Zn_ribbon_NOB1
Other DBs
NCBI-GeneID: 100246530
NCBI-ProteinID: XP_002264385
UniProt: A0ABY9BUG8
LinkDB
Position
4:complement(join(25359505..25359592,25359970..25360057,25360163..25360236,25368955..25369115,25369194..25369283,25369374..25369448,25371655..25371726,25371882..25372054,25372135..25372249,25373290..25373403,25387464..25387543,25387669..25387756,25387898..25387954,25388112..25388177,25388309..25388404,25388553..25388660,25389246..25389344,25389439..25389558,25396300..25396386,25399302..25399373,25399487..25399553,25406885..25406976,25407224..25407301,25408784..25408921,25409041..25409176,25409296..25409491,25409840..25409999,25410126..25410232,25411045..25411155,25411259..25411520))
AA seq 1089 aa
MPATTATKKRPQPPQPSPSQPQPKHQASSSPLAEEDLDEDVFLEETLILEDEHILRDIED
RRALASRLSKWARPPLSSAYLSSSQSIVFQQLEIDYVIGESHKELMPNSSGSAAIIRIFG
VTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEGRMREVNRNSRVPKFVRRIE
MVQKRSIMYYQLQSSHPFLKIVVALPTMVTSCRGILDRGIQIEGFGMKNFVTYESNVLFA
LRFMVDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELTSHIPEGEFSKMAPFRI
LSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNVMTLKSCSPIVGVDVMSFE
TEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERASVLGIAEFPILGRIRNSRVRVK
DTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHS
IISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQS
IKVLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEANAGFYEKPIATLDFASLYPSI
MMAYNLCYCTLVTPEDVRKLNLPPECVNKTPSGEIFVKSSLQKGILPEILEELLAARKRA
KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEH
TKKLVEEKFTTLGGYEHNAEVIYGDTDSVMVLFGVSTVEAAMNLGREAAEYISGTFMKPI
KLEFEKVYYPYLLISKKRYAGLLWTNPDKFDKMDTKGIETVRRDNCLLVKNLVKECLHKI
LIDRDIPGAVQYVKNTIADLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRD
AATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFE
PILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISNTDRTLCSHCKGR
EAELYCKTVANVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA
KLQLERWNF
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgcctgccaccacagccaccaagaaacgccctcagccgccgcagccgtctccatcgcag
cctcagcccaagcaccaagcatcatcctcacccttggcggaagaagacctcgacgaggac
gttttcctcgaagaaaccctcatcctcgaggatgagcacatcctccgcgacatcgaggac
cgccgggcccttgcctcgcgcctctcaaagtgggctcgtccccctctctcctcagcctac
ctatcttcgtcccagagcatcgtttttcagcagctggagatcgattatgtgatcggggag
agtcacaaggagcttatgcccaattcgtctggctccgcggcaattatccggatctttggg
gtcaccagggaaggacatagtgtttgctgcaatgttcatggatttgagccatatttctac
atcagctgtcctccaggaatgggacccgacgatatctctcgttttcatcaggttctcgag
gggaggatgagggaggtcaataggaacagtagggttcccaaatttgtccgacgtattgaa
atggtgcagaaaaggagcattatgtattatcagctgcagagttcccaccctttccttaaa
attgttgttgcattgccaacaatggttaccagctgccgtggtattcttgacagaggcata
caaattgaaggttttggcatgaagaattttgtgacatatgaaagcaatgttctttttgct
ctccgtttcatggttgattgcaacattgttggaggaaattggatagaagttcctgctgga
aaatataagaaaacagcaaagaacctgtcttattgccagttagagtttgattgcttgtac
tcagagttgaccagccatatcccagaaggtgaattctcaaaaatggctccgttccgcata
ttgagttttgacattgagtgtgctggtcgtaaaggccattttcctgagccaacccatgat
cctgttatccaggtggccaatcttgttactttgcaaggagaggatcagccatttgtccgt
aatgttatgacccttaagtcatgttcgccaatagttggtgtcgatgtgatgtcatttgaa
acagaaagagaagtcttgctagcttggagggactttatccgtgaagtggaccctgatatt
ataattggatataacatctgcaaatttgatttgccatatctcattgagagagcttcggtc
ctcggaatagcagaatttccaatacttggccgcatcaggaatagtcgggtccgtgtcaaa
gataccactttttcttcaagacagtatggaacaagggagagtaaagaagttactgtggaa
gggagagtgcaattcgatttgcttcaggttatgcaacgggattataaattaagttcttat
tcactgaattctgtgtctgcacactttctttctgagcagaaagaggatgtccaccattca
ataatatctgatcttcagaatgggaatgcggaaaccaggaggcggcttgctgtatactgt
ttgaaggatgcttatctcccacagcggcttttggacaaactgatgttcatttacaattat
gttgagatggctcgtgttacaggtgtccctatctcctttcttctttccagagggcaaagc
attaaggtactttctcaacttcttaggaaggcaaaacagaagaaccttgttcttcccaat
gtcaaacaagcaggatctgaacaaggaacatatgaaggtgcaactgttttggaggcgaac
gcaggattctatgaaaagccaattgcaacattggattttgcatcactatatccatctatc
atgatggcatataatttatgttactgcacactggtaacacctgaagatgttcgcaaactc
aacctcccaccagaatgtgtcaacaaaactccatccggtgaaatatttgttaaatcaagt
ttacagaagggcattcttccggaaattcttgaagaactattagctgcccgtaaaagagca
aaagcagatttgaaggaagcaaaggatcctcttgagaaggctgtgctagatggtcgtcag
cttgccttgaagataagtgcgaattctgtatatgggtttacaggagccactgttggccag
ttaccatgtatagagatatcttctagtgttacaagctatggtcggcagatgattgagcac
acaaaaaaactggtggaagagaaatttacaacacttgggggctatgaacataatgctgag
gtgatatatggggacacagattcagttatggtgctttttggcgtgtctacagtggaagca
gcaatgaacttgggtagagaggcagcagaatatatcagtggaactttcatgaagcccatc
aaactagagttcgagaaagtttattatccatatctactgattagcaagaaaagatatgct
ggtttgttatggacaaacccagacaagttcgacaaaatggatacgaaaggcattgaaact
gttcgaagagacaattgtctattggttaaaaatctggtaaaggaatgcctccacaaaata
ctaattgacagggacattcctggtgcagttcagtatgtcaagaatacaattgcagatctt
ctcatgaaccgcatggatttgtcacttttggttattactaagggtttgacaaagactgga
gatgattatgaagtaaaggcagctcatgttgaacttgctgaacgcatgcgcaagcgagat
gctgcaactgctccaaatgttggggatcgagtaccatatgttattattaaagcagcaaaa
ggtgccaaggcttatgaaagatcagaagaccccatctatgtgctggaaaataacatacca
atagaccctcaatactacctcgaaaatcaaattagcaagccacttttaagaatatttgaa
cccattttgaagaatgctagcaaggagcttctccatggaagtcacacaagatctatttcc
atctcaactccttcaaatagtggcataatgaaatttgcaaagaaacaactcagttgcatt
ggctgcaaagctctaattagtaatacagacagaactctctgctcacactgcaagggaaga
gaagctgaactttattgtaaaacagtagctaatgtgtctgagttggagatgcttttcgga
aggctttggacacagtgccaggagtgccaaggttccctccatcaggatgtgctttgtaca
agtcgagattgtccaatattttatcggagaaagaaggcacagaaagacatggctgaagcc
aagctgcaattagaacggtggaacttctaa

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