KEGG   Vitis vinifera (wine grape): 100246661
Entry
100246661         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100246661
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100246661
   03041 Spliceosome [BR:vvi03041]
    100246661
   03009 Ribosome biogenesis [BR:vvi03009]
    100246661
   03016 Transfer RNA biogenesis [BR:vvi03016]
    100246661
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100246661
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100246661
Spliceosome [BR:vvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100246661
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100246661
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100246661
Transfer RNA biogenesis [BR:vvi03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100246661
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C nSTAND3 ATPase_2
Other DBs
NCBI-GeneID: 100246661
NCBI-ProteinID: XP_002266524
UniProt: F6H9P7
LinkDB
Position
11:join(12283753..12284727,12285187..12285501,12285630..12285734,12285842..12285910,12286192..12286359,12286442..12286513,12286617..12286733,12294936..12295157,12295240..12295398,12296151..12296240,12296392..12296484,12297404..12297557,12304037..12304185,12304278..12304373,12311133..12311225,12311811..12311921)
AA seq 995 aa
MEESPTLGKRKLPEENSEVKQTPKQEESASKRRNLTRTCVHEAAVPVGYTSNKDESVHGT
LSNPVYNGKMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYSIAMAFRDK
QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ
PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFVKLQDSFTKQKQGVGSKSV
NSKTSGRIAKGGNASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTK
EEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGI
CIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVISNSFHQF
QYEKALPDIGKKVSKLEHEAAMLDASGEAEVAEYHKLRLDIAQLEKKMMSEITRPERVLY
FLLPGRLVKVREGGTDWGWGVVVNVVKKAPAGGTLPSALSSSRGGGYIVDTLLHCSPGST
ENGSRPKPCPPHPGEKGEMHVVPVQLSLISALSKLRISIPPDLRPLEARQSILLAVQELG
TRFPQGLPKLNPVKDMGIEDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAEV
NHEIQQLKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLV
TELMFNGTFNDLDHHQVAALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEIQHE
CKLEVNVDEYVESTARPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL
RAAANAVGEANLENKFAAASESLRRGIMFANSLYL
NT seq 2988 nt   +upstreamnt  +downstreamnt
atggaagagtctccgactctggggaaacggaagctacctgaagaaaattcggaggtcaaa
cagaccccaaagcaagaagaatctgcctcgaagcggcgcaatttgacacgcacatgtgtg
cacgaggcagctgttccagttgggtacacttcaaacaaggacgaatctgttcacggaacc
ctctcaaatcctgtctacaatggaaaaatggcaaagacctaccccttcactctcgaccca
ttccagcaagtatcggttgcatgtctagaacggaatgaatcagttttggtttctgcccat
acatcggcaggcaagactgctgtagctgaatattcaattgccatggcatttagggataag
caaagggttatttacacatcacctttgaaggcattgagtaatcagaagtatagagagcta
agccaggaattctctgatgtggggttaatgactggtgatgtcacgctctcgcctaatgcg
agttgcttggtcatgactacggagattttgagaggaatgctatataggggttctgaggtt
ttgaaggaagttgcctgggtcatttttgatgaaattcattatatgaaggaccgtgagaga
ggggtagtttgggaagagagtataattttcctacctactgctattaaaatggttttcctc
tctgctacaatgtcgaatgctacagaatttgcggagtggatttgtaatttgcataaacag
ccatgtcatgtggtgtacacagattttcgaccaacacctctgcagcattatgtgtttccc
ataggtggatcaggactgtatcttgttgttgatgagaatgagcagttcagggaagacaat
tttgtgaagctgcaggacagtttcacgaagcagaagcagggtgttggaagcaagagtgtg
aattccaaaactagtggtcgaattgctaaaggtggtaatgcttcggggggttctgacata
tttaaaattgtaaagatgattatggaacggaagtttcaaccagttatcattttcagcttc
agtagaagagagtgtgagcaacatgccatgtccatgtccaagcttgatttcaataccaaa
gaggagaaggatgtagttgagcaggttttccggaatgcggtattatgcttgaatgaagaa
gacagaaatttacctgctattgagttgatgttgccactactgcagcgaggcatcgctgtt
caccattctggtcttcttcctattattaaagaattggtagagcttctattccaagaaggc
cttgtaaaggccctttttgccacggagacttttgccatgggtttaaacatgcctgcaaaa
acagttgttttcacagctgttaagaagtgggatggtgatagtcatcgtttcattggatca
ggcgagtatatccagatgagtggaagagctgggcgccgtggcaaagatgatcgtggcatt
tgtatcataatgattgatgagcagatggagatgaacacactcagggacatggttctgggt
aagccagctccattggtcagtactttcaggctgagttactactcaattctgaatttaatg
agccgtgctgaaggccaatttactgccgagcatgtaatcagcaattcattccaccaattt
cagtatgagaaggctttacctgatataggtaaaaaggtgtcaaagctggaacatgaagca
gccatgcttgatgcttcgggagaggctgaagttgctgaatatcataagttaagacttgat
atagctcaacttgagaagaagatgatgtcggaaataacaaggccagaaagggttttatat
tttcttcttcctggaaggctggttaaggtcagggaaggtggaacagattgggggtgggga
gtggtggttaatgttgtgaaaaaggcccccgcaggaggcacattgccttcagccctgtct
tcttcacgtggtggtggctatatagttgataccctacttcattgttcacctggttcaact
gagaatggctcacgtccaaaaccgtgccctcctcaccctggtgaaaagggtgaaatgcat
gtggtcccagttcaattgtccctgatctctgctcttagcaaactaagaatatctatacct
cctgacctccggccattggaagcaaggcaaagcatactgcttgcagtccaggagctagga
acacgcttccctcaaggccttccgaagcttaatccagtcaaggacatgggtattgaagat
ccagaatttgttgagttggccaatcaaattgaggaacttgagcagaaattatttgctcat
ccactgcacaagtcccaggatgagaatcagatcagaagtttccagaggaaagcggaggtg
aatcatgaaattcaacagcttaagacaaaaatgcgtgattcccagcttcaaaaatttcgt
gatgaacttaaaaaccgttcacgggttttgaaaaagcttggccatattgatgctgatggt
gtcgtccagttaaagggacgggctgcctgcttgatagacactggagatgagctccttgtt
actgaactgatgttcaatggtacattcaatgacctggatcatcaccaagtagcagctctt
gcaagttgtttcattccaggagacaaatcaactgagcagatacatttgaggacagaactt
gctaaaccattacaacaacttcaagatagtgcaagaagaatagcagagatacaacatgaa
tgcaaattggaagtgaatgtggatgagtacgtggaatcaacagcgaggccatacttgatg
gatgtgatctactgttggtcaaagggtgcaacttttgcagaggttatacaaatgactgat
atctttgagggtagtatcattagaagtgctagaagacttgatgagtttttgaaccagttg
cgagctgctgctaatgctgtgggagaagctaatttagagaacaagtttgcagctgccagt
gaaagccttcgtcggggtattatgtttgcaaattccctgtatctataa

DBGET integrated database retrieval system