Vitis vinifera (wine grape): 100246694
Help
Entry
100246694 CDS
T01084
Name
(RefSeq) extensin isoform X1
KO
K13095
splicing factor 1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100246694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100246694
Spliceosome [BR:
vvi03041
]
Complex A
Other components
Complex A specific factors
100246694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
100246694
NCBI-ProteinID:
XP_010651353
UniProt:
D7SLG1
A0ABY9C0I3
LinkDB
All DBs
Position
6:join(1074318..1074623,1075055..1075180,1075317..1075356,1075460..1075542,1076975..1077052,1077164..1077217,1077414..1077542,1077711..1079555)
Genome browser
AA seq
886 aa
AA seq
DB search
MTKVDQASAVESRRAQMTGTSTSPAATTSSSRISMFGAKSGFVIPKNKLSGSMVPIFRAG
KKLGSSDGANEESTKTVQRKTKWGPDLTQDAAVRRGTALAFQTRVDQITLQLKSGVLEIG
DNQDSSLVAQVPDQEFPSHQNNSEKSELLELERREAIGEMLKLNPSYKAPPDYKPLLKEA
RVPIPVKEYPGYNFIGLIFGPGSDTLKRLEKETGAKVQVYGNKADTGQKVEITPSDGIQG
AHEELYLHISAETFEKVDAAVALIELLVTPVSGNPAAVSTTPTSVSGDNVNVHNQSQEVV
PTTVVNPGVVQPVSGPSQTPPQGQFQYPGPWFPIGPPPIPMHLPSGFIPPSNPSAQILNN
PPHLPSPSFSASNMPSLFGPRPSPAAGFGSVLRNPSPVPLRPQSSIQMLQRPYMPQANLP
MLAQHPLLAQPNVSAPLPFPVNQATPLGPPTTGRPSMPLLPQSVPNLLSGPLPDRPITPA
GSSTGWPRVPLGTPASLGPNQMVQMTTSMVPGVPRPVVASVAPPSNISAANMVSPVTFSS
RPSAPQLPSTQQNRPLTPPTFASVPPPQMGPSPTTPVSLPPAPVPPQMQPLTTPAPIPNP
SPRPVLGSTPVPSSMQSSTPPTPLQFGIPSSVSGGIPSFTSVRPPVATLIPQRPSSSDFT
FQPHQPLNAVSQAVPMPSGQPTTQNPLPPKPIMQPPMAPQPPSFRVAMHNSTPPATMPPF
LRPQVNNQMGPPHSQISAASFPGTPSSLSPMSAPLRPPAFQSPSSVAAAIPVPQRGPGNF
NPVRQISNLPGPFPSRSGNAMQLQQNFPAPPARPGNPSAPNQHFGNMSFASPKPASGPHG
APQIYDPFSPTSVPRAPPQQGGNPAKLRKQENDPEYEDLMASVGVK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggttgaccaggcatctgctgttgaatctcggcgtgctcagatgactggaacg
agtacttcgcctgctgcaactactagtagttcaaggatctccatgtttggagcaaagtct
gggtttgttatcccgaaaaataaattatcaggctctatggttcccatcttccgggctggt
aaaaaattgggaagtagtgatggggcaaatgaagaaagtaccaaaacggtgcagagaaaa
actaaatggggccctgatctgacacaggatgctgctgtcagaagaggaacagctttagct
tttcagactcgggtggatcaaattacactacagctaaaatcaggagtactggagattggc
gacaatcaagattcatcattggtagcccaggttcctgatcaggagtttcccagccatcag
aataacagtgagaagtcagaactgttggaacttgaaagacgggaagctattggtgagatg
ttgaagttaaatccaagttacaaagccccaccggattataaaccattgttgaaagaggcc
agagttcctatccctgtgaaagaatatcctgggtacaatttcattggcttaatatttggg
cctgggagtgatactctaaagcgtctagaaaaggaaactggagccaaggtacaagtatat
ggtaacaaagcggatacaggacagaaggttgaaattactccatctgatggaatccagggt
gctcatgaagaattatatcttcatatatcagccgagacatttgagaaagttgatgctgca
gtcgcgctgattgaattgctagtcactccagtttcaggaaatccagctgctgtttccacc
acaccaacttcagtttctggggataatgtgaatgttcataatcaaagccaggaagtggtc
cctactactgtggtaaacccaggagtggtgcaaccagtgtcaggtccttcacaaactcct
ccacaaggtcagtttcaataccctggaccatggtttcccattggccctcctcccattcca
atgcacctgccttctggcttcattcccccatcgaatccttcagcacaaattctcaacaat
cctcctcatctaccatcaccgtctttcagtgcttcaaacatgccttcattgtttgggcct
cggccatcaccagcagctggatttggctcagtactccgaaacccatctcctgttcccctc
aggccacagtcatcaattcagatgctgcagcggccatacatgcctcaggcaaatctgcca
atgttggctcagcacccattattggctcaacctaatgtttcagctcctcttccatttcct
gtcaaccaagccacacctctgggaccaccaacaactggaaggccttcaatgcctttgttg
cctcaatctgtaccaaaccttctttcaggaccactaccggaccggcccataacccctgct
gggagctctactggatggcccagagtgccattaggcactccagcatccctaggcccaaac
caaatggtgcagatgaccacatcaatggttcctggagttccacggcctgttgtagcatct
gtagcaccaccatcaaatatctcagcagccaatatggtatcacctgtaaccttttcatcc
cggccatctgctccccaattacccagcacacagcagaaccgtccccttacacccccaacc
tttgcttctgttccaccacctcagatggggccctcccctacaactccagtttctctccct
ccagcacctgtacctccacaaatgcaaccattaactacaccggcaccaattcctaaccca
tccccaaggcctgtattggggtccactccagttccttcatcaatgcaatcatctacaccc
ccaacacctctgcagtttgggattccaagttccgtttctggaggtatccctagcttcact
tctgtaaggcctcctgtagcaactctgataccacaaaggccaagttccagtgatttcact
tttcagcctcatcagccacttaatgcagtctcccaggctgttcccatgcctagcggtcaa
cctacaactcagaatcctctgccccctaaaccaattatgcaacctcctatggcaccgcaa
ccgccatctttcagggtggccatgcacaattcaactcccccagccaccatgcccccgttt
ctgaggccacaggttaacaatcagatgggtccacctcattctcaaatatctgctgcatcc
tttcctggaacgccatcttccttgtctcccatgtcagctcctctcagacccccagcattt
caaagtccaagttctgttgcagctgcaattccagtcccacaaaggggaccagggaacttc
aacccagttcgccaaatctccaatttgcctggtcctttcccttccagatcaggaaatgct
atgcaactccagcagaactttccagctccaccagctcggccaggaaacccatcagcccca
aatcagcactttggcaacatgtcctttgcttctcctaaaccagcctctggccctcatgga
gcaccgcaaatatatgatccattctccccgacttctgtgcctcgtgcacctccgcagcag
ggaggtaatccagcaaagctgagaaaacaggagaatgacccagagtacgaggacttgatg
gcctctgttggagtaaaataa
DBGET
integrated database retrieval system
