Vitis vinifera (wine grape): 100246732
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Entry
100246732 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100246732
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100246732
03015 mRNA surveillance pathway
100246732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100246732
03041 Spliceosome [BR:
vvi03041
]
100246732
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100246732
Spliceosome [BR:
vvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
100246732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
100246732
NCBI-ProteinID:
XP_059593453
LinkDB
All DBs
Position
6:join(6155235..6155255,6155368..6155457,6155644..6155766,6156134..6156301,6156406..6156492,6156634..6156773,6160150..6160197,6160306..6160362,6160566..6161345,6161671..6161925,6162062..6162190,6162301..6162501,6162597..6163266)
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AA seq
922 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDVTKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDRKDVNGKEVQISLTGFMEKNTGKFMKELWALLLSAQKNASGVPQ
QFLDAKEEETRRKKVEADRIANEIEKKKEKEIKELEQEKMKKMDGGIDNSKVTNAVLEPI
SKHMLPMSSNAHSKDDKGTEERNGLRGRNRVSRSPHSAGHSPSSPRGTPSRSISKSVSNS
GSYLDGRHRSRSVSGSPRPRRRSLSSERVHHSPEKLTPRRRHSPLGSLSPSRRRSSYSRR
RSTSVSRHRSPSPMRRRLRSPGRRRSQTPVRRRSPRRSPPGWRRSRSPGRRRSRSPGRRR
SRSPGRRRSRSPGRRRSRSPGRRRSPSPLRRRSLSPAWRGSPPPLRRRSPTPKRRRSPTY
KLPSPVRRWRRRSPTPRHRSPSPVRRRSPIPARRRSPSPFRRRSPSSNGWSSSSPIRHRS
PSPVQRKSPKRQRRSPVQSPRERIRTREKSSPVHRDTLREKVEHDVETRRRPDSLSHRTP
ISMRSPQRDPKDQNNFRNKVPSLSASPEKSRSLSESPAHIRKSSSSEDRRSPSPYESPVR
QTRKRPSPPPKPRQQKPRHESPETSVEEEEYAREDGDHRSKSLEKRSTYPSMVGKQRDSP
VKVHSKEEYSPERLSGRRANETRGHSENTELRKESQKIKSERASGRVSHHKVLDQQKSPY
KDSLLGERQQTSYSGEGYKVDEKKNSHPKDLDHKSDALPKSLVKVGQKNQSGPFDSGSEE
SDKHRSEGKERRKHKRSDRHEAASDEDSYDSQIDGRKEAKRRKKEEKRLRKEERRRRREE
RRRRREDRRAEKLKGKSRDTVTPPSDFDKNQSDAYVSDGEHASRREPHSSESEEAESEQK
KLEIELRKKALESLRAKRGVGH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggagggtttttccggggtacgtcggctgatcaggacactcggttctcgaacaaa
caggcaaagctgttgaaatctcagaagttcgctccggaattggatcatctggtggacgtg
acaaaagtgaagatggatgttattaggccctggattgctaacagggtgactgagcttctg
ggatttgaagacgaggttcttatcaacttcatttatgggcttcttgatagaaaggatgtg
aatggaaaggaagttcaaatatcactgaccgggtttatggagaaaaatacaggtaagttt
atgaaagagctttgggcgcttcttctcagtgcgcagaagaatgcaagtggtgtccctcaa
cagtttttggatgccaaagaagaggaaactaggaggaagaaggtggaggcagataggatt
gccaatgaaattgagaagaaaaaagagaaagaaattaaagaactggagcaggagaaaatg
aagaagatggacggcgggattgacaactcaaaggtcacaaatgctgtattggagccaatc
tcaaagcatatgctgccaatgtcttccaatgcccactccaaagatgacaaaggaactgaa
gagaggaatggcttgagaggaaggaacagggtttctagatccccccattcagctggtcat
tctccttcatctcctcgaggcactccttcaaggtcaatcagcaaatcagtctccaattca
ggaagctatctagatggaaggcacaggtcaaggagtgtatctggatcacctcgaccacgg
cggcggtccctttcttctgaaagggtgcatcactccccagaaaaacttacacctcgtcga
agacattcacctctaggatctctctctccctcaagaaggagatcatcttattctagacga
agatccacatcagtttcgcgtcacagatcaccctctcctatgcggcgtagattgcgttct
ccagggcgacgcagatcacaaactcctgtgcgacgtagatctccacgcaggtcaccacct
ggatggcgtagatcccgttcacctggacgacgcagatcccgttcacctggacgacgcaga
tcccgttctcctgggcgacgcagatcccgttctcctgggcgacgtagatcccgttctcct
gggcgacgtagatctccatctcctttgcggcgtagatctctatcacctgcatggcgtgga
tccccccctcctttgaggcgcagatcaccaacgccgaaacgacgtaggtcaccaacttat
aagttaccttctcctgttcgacggtggcgtcgaagatctccaactccccggcacaggtct
ccatcgccagtaagacgtaggtctccaatacctgcccgtcggagatcaccgtctcctttt
cgacgaagatccccttcatcaaatggatggagttcatcctctcctattagacataggtct
ccttcaccagtccaaaggaaatccccaaagcgccagaggaggtcacctgtgcaatcccct
agagaaagaatcaggactcgtgagaaatcatctcctgttcatcgtgatactttaagagag
aaagttgaacatgatgttgagacacgcagacgaccagattctttgtcacatcgaacccca
atttctatgagatcaccacagagagatccaaaggaccaaaacaacttccgtaataaagtg
ccatctttgtcagcttcacctgagaagtctcgaagtctgtcagagtctccagcacacata
aggaaaagcagttctagtgaagataggaggtctcccagtccatatgagagtcctgtgagg
caaacaaggaaacgccccagtcctccaccaaaaccaaggcaacagaaacctcgtcatgag
agtccagaaactagtgtagaggaggaagaatatgccagggaagatggggatcatagatcc
aagtctttagagaagaggtccacctatccatccatggtgggtaagcagagagattctcct
gtgaaagttcattccaaggaagagtactctcctgaaagattatctggtcgtcgagctaat
gaaacccggggccattccgagaacacagaattgagaaaagaaagccaaaagataaaaagt
gagagagcttctggaagagtctcccatcacaaagttcttgatcaacagaagtccccttac
aaagattccttattaggtgagaggcagcagacatcatactctggagaaggttacaaagtt
gatgagaagaagaattctcaccctaaggatttggatcacaaatcggacgctctaccaaaa
tccttagtaaaagttggtcagaaaaatcagagtggtccttttgattctggttctgaggaa
agtgataagcacagatctgaaggtaaggaaaggagaaagcataagaggtcagataggcat
gaagcggcatcagatgaagacagttatgattcccaaatagatgggaggaaagaggccaag
agaagaaaaaaggaggaaaaaagactgcgaaaagaggagaggcgtagaaggcgcgaagaa
cgacgtcgcagaagggaagaccggcgtgcagagaagctgaaagggaaatcaagggacact
gtcactccaccttcagattttgataaaaatcaaagtgatgcatatgtttcagatggggaa
catgcttcaaggagggaacctcattcaagtgaatctgaagaagctgagtctgagcagaaa
aagcttgagattgagttacggaaaaaggctcttgaatctcttagagctaagaggggtgtt
ggtcactaa
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