KEGG T01084: 100246859

Vitis vinifera (wine grape): 100246859

Entry

100246859         CDS       T01084

Name

(RefSeq) protein CHROMATIN REMODELING 25

K10875

DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100246859
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100246859
DNA repair and recombination proteins [BR:vvi03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     100246859

SSDB

Motif

Pfam:

SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 AAA_22 SLFN-g3_helicase

Other DBs

NCBI-GeneID:

100246859

NCBI-ProteinID:

XP_002282100

LinkDB

Position

3:complement(join(5352565..5352930,5353908..5354006,5354095..5354287,5354663..5354721,5354809..5354886,5355018..5355101,5355216..5355329,5355448..5355567,5356350..5356482,5356565..5356656,5359002..5359088,5359204..5359278,5363537..5363587,5363790..5363885,5364776..5364862,5364947..5365003,5365105..5365230,5365294..5365534,5365645..5365731,5366127..5366507,5367263..5367441))

AA seq 934 aa
MEEYDEEVPSSSDPSDSSDEFAGESEEEEEEENDDEERSAVKSPTSDEGRKSQNVDALLR
GNLVLRRQSLLPRVLSVTDGAAVARKPFKPPFSNGYHDRNDQLVHRLWARKRFVPWGSSR
PALVLITNRVNISSAAEKDVLEESVSLPAGIDPLVLWHPEESEEQADNLMPIVVDPLLVR
FLRPHQREGVQFMFDCVSGLSSTANISGCILADDMGLGKTLQSITLLYTLLRQGFDGKAM
VKKAIIVTPTSLVSNWEAEIKKWVGERVQLVALCESTRDDVVFGIDSFTSPHSPLQVLIV
SYETFRMHSSKFSHSGSCDLLICDEAHRLKNDQTLTNRALAALACKRRVLLSGTPMQNDL
EEFFAMVNFTNPGILGDATYFRRYYETPIICGREPTAAEEEKKLGAERSAELSSTVNQFI
LRRTNALLSNHLPPKIVEVVCCRLSPLQSELYNHFIHSKNVKKVINEEMKQSKILAYITA
LKKLCNHPKLIYDTVKSGNQGTSGFEDCMRFFPPEMFSGRSGAWTGGEGIWVELSGKMHV
LARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFS
DPLKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYR
FLSTGTIEEKVFQRQMSKEGLQKVIQQEQKDSLKTQGNFLSTEDLRDLFSFHENVRSEIH
EKMNCNRCQNYDERPESVREEDGFESKNEGCQSYQMDCDDIGGFAGITGCLHKLKRSEKQ
VGTALEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKVRANMQGV
EANKNQSDKRGKLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFHLAGIKSMRTSK
GTPSVTLKPKLSIGSQLPLKRLSPDSVQHDDDFE

NT seq 2805 nt +upstreamnt +downstreamnt
atggaagaatacgacgaagaagttccttcgtcgtccgatcccagtgattccagcgacgaa
tttgctggcgaaagcgaagaggaggaagaggaggagaacgacgacgaagaacgatcggcg
gtcaaatcaccaacgtccgatgaaggtaggaaatcgcagaatgtcgacgctctcttgaga
ggtaaccttgttttaagaagacaatcgttacttccacgagttctttcagtgacagatggg
gcagctgttgctagaaaaccctttaaacccccattctctaatggctaccatgatcggaat
gaccagttagttcatcgtctttgggctcgcaaacggtttgttccttggggctcctcaagg
ccagctttggttttgataaccaaccgtgtgaatatatctagtgctgctgagaaagatgtg
ttggaggaaagtgtgagtctgccagcagggatcgaccctttggtgttgtggcaccctgag
gaatctgaagagcaggcagataatttgatgccaatagtggtggacccattgcttgtccgt
ttccttcgacctcatcagagagagggggttcagttcatgtttgattgtgtttcagggtta
tctagcactgctaatatttctgggtgcattttggctgatgatatgggcctgggcaaaact
ttgcaatcaatcacattgttgtatactcttcttcgtcagggatttgatgggaaagcaatg
gttaaaaaggcaataatcgttactcctactagtcttgtaagtaactgggaggctgaaatt
aagaagtgggttggagaaagagttcaacttgttgctctctgtgaaagtacccgagatgat
gttgtatttggaattgatagttttacaagtccccatagccctttacaggttctgattgtt
tcatatgagacatttcgcatgcattcttcaaaatttagtcacagtggatcctgtgacctt
ctcatatgtgatgaggctcacagactgaaaaatgaccagacattaacaaatcgggcattg
gctgctctggcatgcaagcgtcgcgttttattgtcaggcactccaatgcagaatgaccta
gaagagttctttgctatggttaactttactaatccaggaatcttgggtgatgctacatat
ttccgtcgttactatgagacaccaatcatttgtggaagagaacctactgcagctgaagaa
gagaagaaattaggtgcggaacgatctgcagaactgagttcaacagtgaaccagttcata
ttgaggaggactaatgcattattatcaaatcacctcccaccaaagatagttgaagttgtt
tgttgcaggttatctcctctccaatcagaattgtataaccattttatacattctaaaaat
gttaaaaaggtaattaatgaagaaatgaagcagtcaaagattttggcttatatcaccgct
cttaagaagctttgcaatcatccaaagctcatttatgatactgtaaaaagtggaaaccag
ggaacatcaggttttgaagactgtatgcgctttttccctccagaaatgttctctggaaga
tctggagcatggaccggtggtgaagggatttgggttgaactgtctgggaaaatgcatgtc
ttagcccgattgctggcccatctgcgtcagaaaacagatgaccgaattgtccttgtctca
aactatactcagacattagacctttttgctcaattgtgtcgagagagaagatatccgtac
ttgagacttgatggcaccacatcaatcaacaaaagacagaagttggtaaaccgtttcagt
gacccattgaaggatgagtttgtgtttctcttgagcagcaaggctggtggttgtggcctc
aatttgattggtggaaaccgactagtcttgtttgatcctgattggaatcctgccaatgat
aaacaagctgctgcaagagtctggagggatggacaaaagaagagagtatacatctataga
tttttaagtactgggacgatcgaagaaaaggtattccagcgtcaaatgtcaaaagaaggg
cttcaaaaagtaattcagcaggagcaaaaagacagccttaagacacagggtaactttctt
tcaacagaagatttacgtgatctcttctcatttcatgagaatgtgaggtctgaaattcac
gaaaagatgaattgcaaccgttgtcaaaattatgatgaaagacctgagagcgtgagagag
gaggatggttttgaatcaaaaaatgaaggttgtcagtcttatcaaatggattgtgatgat
ataggtggatttgcaggcattactggatgcttgcataagttaaaaagatctgagaaacag
gtggggactgctttggaagaggatttaggaagttgggggcatcattttttctcaacatca
gtgcctgatgctatctttcaagcttcagcgggtgatgaggtcacgtttgttttcacaaac
caagtagatgggaagcttgtacctgttgaatcaaaagtacgggcaaatatgcagggagtt
gaagcaaataagaaccaatctgacaaaaggggaaaactgctccaaaaacccacgttactg
tctaaacatcaacagtcagccccaccagtttctaacaaaggagattctatcaccagcata
tcatcatcctcttccaagccttttcatctggcaggtataaaatcaatgagaacatcaaaa
ggcacaccatctgtaacattaaagcccaaactctctattggaagtcaattacccctgaaa
agattgtctcctgattctgtacaacatgatgatgactttgagtga

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