Vitis vinifera (wine grape): 100248020
Help
Entry
100248020 CDS
T01084
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100248020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100248020
03009 Ribosome biogenesis [BR:
vvi03009
]
100248020
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100248020
Spliceosome [BR:
vvi03041
]
Complex A
U1 snRNP components
U1 related factors
100248020
Complex B
100248020
Ribosome biogenesis [BR:
vvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100248020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
100248020
NCBI-ProteinID:
XP_002279117
UniProt:
A0ABY9CH28
LinkDB
All DBs
Position
9:complement(join(1911333..1911391,1911494..1911727,1913260..1913486,1913593..1913678,1914200..1914292,1914674..1914828,1915009..1915170,1915308..1915487,1922745..1923013,1923694..1923749))
Genome browser
AA seq
506 aa
AA seq
DB search
MSRYDGRSGDPGSYRDRRSESGFGGASGYGSGGVRSSSSKRDLDGVESPRKPDLDGLTPF
EKNFYVESPAVAAMSEKEVEQYRERREITVEGRDVPKPVMNFRDVGLPEYVMQEITKAGF
AEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAIIHVNAQPILAPGDGPIVLVLA
PTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRDLQKGVEIVIATPGRLIDMLES
HHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFL
YNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRLVKLLEDIMDGGRILIFMDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVAPELAAMGR
GAPPPPSGHGGFRDRGRGHGSGRAWG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatggtcgctccggcgaccccggttcgtaccgtgaccggaggagtgaa
tcagggtttggtggggcttctggatatggtagtggtggtgttcgctcatcctcaagcaag
agagatcttgatggggtagagtcaccaaggaagccggatttggatgggttaactccattt
gagaaaaatttctatgtggagtccccagcagtggcagcaatgtcagagaaagaggtggag
cagtatcgggaacggagggaaatcacagttgaaggccgggatgttccaaaaccagtcatg
aattttcgcgatgtgggcttgccagaatatgtcatgcaagaaattacaaaagctggcttt
gctgaacctacacccatccaagctcaaggatggccaatggctttgaagggccgtgatgtc
attggtattgctgaaacaggatcaggaaagacacttgcatatctattgcctgcaatcatc
catgtaaatgctcagccaattttagctccaggagatggcccaattgtattagttttagct
ccaactcgtgaacttgctgttcagatacaacaagaagcagctaaatttggtgcatcatcg
aggattaagaatacctgcatacatggtggagttcctaagggacctcaaattcgtgatctt
cagaaaggtgttgaaattgttattgctacaccggggaggttgattgacatgttggaaagc
catcacacaaacttgcgaagggtcacttaccttgtgctggatgaggctgatcggatgtta
gatatgggttttgaaccgcagattagaaaaattgtttctcagattcgtcctgatcgtcaa
accctctattggagtgctacatggcccaaggaggtggaacaacttgctaggaagttcctt
tacaacccatgtaaagtggttataggatctgcagatctaaaagctaaccatgcaattcgt
cagcatgtggagattgtttccgagaatcagaaatacaacagattggtgaagttgctggag
gatattatggatggcggccgaattcttatattcatggacactaagaaagggtgtgaccag
attactcggcagcttcgcatggatggttggccggcactctcaattcatggagataagagt
caagcagaaagagattgggtactctcagagttcaaagctggaaagagtccgataatgact
gcaacagatgttgcagctcgtggtttagatgtcaaggatgtgaaatttgtgatcaactat
gacttcccgggatctcttgaagattatgtccaccgcattggtcgaacaggaagggctggg
gccaaaggaacagcctacactttcttcacagccgccaatgccagattcgctaaggaactc
attaccatacttgaggaagcagggcagagggtcgctccggaactggcagccatgggtcgt
ggtgcacctcctcctccatcaggtcatgggggcttccgagaccgtgggaggggccatggc
agtggacgcgcctggggctaa
DBGET
integrated database retrieval system
