Vitis vinifera (wine grape): 100248187
Help
Entry
100248187 CDS
T01084
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100248187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100248187
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
100248187
Prokaryotic type
Archaeal type
TFB
100248187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
RB_B
Ribosomal_S27e
WHD_GDS1
Zn_ribbon_LysW
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
100248187
NCBI-ProteinID:
XP_002277679
UniProt:
D7SNF1
A0ABY9C404
LinkDB
All DBs
Position
6:complement(join(20510482..20510615,20510686..20510762,20511656..20511744,20511887..20512017,20512102..20512231,20517334..20517358,20520595..20520953))
Genome browser
AA seq
314 aa
AA seq
DB search
MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG
GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR
LGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGA
TKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSE
ELDIRRSPISVAAAVIYMITQLSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRIIPS
SYAKEEDLRNLCSP
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacgtattgcccagagtgcaagaggtacacggaggtggtgttggaccattcc
gccggcgacactgtctgctccgagtgcggtcttgttctcgaagcccactccatcgacgag
gcctccgagtggcgcaccttcgccaacgagtccgccgacaacgaccctgtccgagtcggg
ggcccctccaaccctctcctcgccgacggcggcctttccacccttatctccaagccctcc
aatggcggaccctccaatgacttcctctcttcctcactgggtcggtggcagaaccgcggc
tccaaccctgaccgctccttgattcaggccttcaagaccatcgccaccatgtgtgatagg
ttgggcctggttgcaaccataaaggacctggccaatgagatttataagaaagtagaagat
caaaagcccctcagaggaagaaatcaggatgcaattttggcagcatgcatatacattgct
tgtcgacaagaagataaaccccgcactgtaaaagaaatttgttcggttgccaatggagcc
acaaaaaaggaaattggccgagccaaagagtacattgtaaaacaactagaggtagagatg
ggtcaatccatggaaatgggaaccattcatgctggggactttctgcggcgcttttgttcc
catcttggcatgaccaatcaggcagtcaaggccgcccaagaggctgttcagaaatctgaa
gagcttgatataaggagaagcccaatttcagtggcagcagctgttatttacatgataact
caattatcggatgacaagaagcttctcaaagatatttctcttgctactggagttgctgaa
gggaccatccggaactcctataaggacctttatccttacgcttccaggataatacccagt
tcatatgccaaagaggaagacctcaggaatctctgcagcccttag
DBGET
integrated database retrieval system
