KEGG   Vitis vinifera (wine grape): 100248310
Entry
100248310         CDS       T01084                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi04120  Ubiquitin mediated proteolysis
vvi04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100248310
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    100248310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vvi04121]
    100248310
Enzymes [BR:vvi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100248310
Ubiquitin system [BR:vvi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100248310
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100248310
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_EIPR1 zf-C3HC4_2 WD40_MABP1-WDR62_2nd EIF3I WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_HPS5 zf-C3HC4 Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_like Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_RFWD3 zf-C3HC4_3 zf-RING_2 Beta-prop_WDR35_TULP_N zf-RING_UBOX Beta-prop_DCAF12 zf-C3HC4_4 zf-RING_5 Beta-prop_IFT140_1st zf-rbx1 U-box zf-Nse RIC1 zf-RING_10
Other DBs
NCBI-GeneID: 100248310
NCBI-ProteinID: XP_002271415
UniProt: D7TEE6
LinkDB
Position
12:complement(join(6383383..6383553,6383758..6383868,6384359..6384538,6385082..6385186,6386289..6386387,6386834..6386989,6387784..6387862,6389387..6389452,6389562..6389719,6390354..6390710,6391064..6391219,6391933..6392010,6392907..6393221))
AA seq 676 aa
MEEVSTGALVPLVKPVMTPSTSVAPTEATGSADEETAEEVGVSNMDKDSLCPICMQIIKD
AFLTACGHSFCYMCIITHLQNKSDCPCCGVYLTNNQLFPNRLLDKLLKKTSAQQISKTAS
PVEQFHHSLEQGCEVSVKELDTLLSVLTEKKRKMEQDEAERNMKILMEFLNSLKMQKVDE
LNETQNDLQYVKEDINVVERHRIELYRVRDRYSVKLRMHVDDPMATKPRTSLVGKSSSGL
VSSSRKIQGGMASGNLQNKQLDGRGQASSQSLHRKDALTGLDSQCINQPGVAVVRKKRIH
SQFNDLQQCYLQKRRQLVNKPHKQDERNTNVIHREGYSAGLADFQSVLTTFSQYSRLKVI
AELRHGDLFHSANIVSSIEFDCDDELFATAGVSRRIKVFDFSSVVNERAEMHCPVVEMST
RSKLSCLSWNKCTKNHIASSDYEGIVTVWDVNTRQSVMEYEEHEKRAWSVDFSRTEPSRL
VSGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSIYIAVGSADHHIHYYDLRNTS
HPLHIFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLS
VNSEYISCGSETNDVFVYHKEISKPVTWHKFGSPDVDDLDDDVGPYFISAVCWKSDSPTM
LTANSQGTIKVLTLSA
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggaggaggtttcaacgggtgctctggtgcctttagtgaagccagtgatgactccctca
acctccgtagctccgactgaggccaccggatcggcagatgaagagacggcggaagaggtt
ggggtctccaacatggataaagactcgctctgccctatttgcatgcaaataatcaaggat
gcgtttctcacggcttgtggtcacagtttctgttacatgtgtatcatcactcaccttcag
aacaagagcgattgtccttgttgtggcgtttacctcactaataatcagcttttccctaat
cgtcttctcgataagctattgaagaaaacttctgctcagcaaatatcaaaaaccgcatct
cctgtggaacaatttcatcattcattagaacagggatgtgaagtgtcagttaaggagcta
gacaccttattatctgtacttaccgagaagaaaaggaaaatggagcaagatgaagcagag
agaaatatgaaaattctgatggagttcttaaatagtttaaagatgcaaaaagttgatgag
ctaaatgagacacaaaatgatctccagtatgtcaaggaggacataaatgttgtagagaga
catagaatagagttgtaccgggtgagggacaggtactcagtaaaactgcggatgcatgta
gatgatcctatggcaacaaaaccgaggacttcattagttggtaagagcagcagtggtctt
gtctccagttctcggaaaatacaaggagggatggcttcaggaaatttgcaaaataagcaa
ttagatggaaggggtcaagcaagctctcaaagcctccacagaaaggatgccttgactggg
ttggattcacaatgcattaatcaaccaggggtggctgtagtaagaaaaaaacgcatccat
tctcagttcaatgacctccaacagtgttacctgcaaaagcgacggcagttggtgaacaaa
ccacataagcaggatgaaaggaataccaatgttatacacagggagggttatagtgcaggt
cttgcagattttcaatctgtgttgaccaccttctcacagtacagtcgactgaaggtcatt
gctgaactcaggcatggggatctttttcactccgccaatattgtatcaagcatagaattt
gactgtgatgatgagttgtttgctactgctggagtttcaaggcgcataaaggttttcgac
ttctcttcggttgtgaatgaacgtgcagaaatgcactgtcctgttgtggagatgtccact
cgatccaaacttagttgcttgagttggaacaagtgtactaagaatcatatagctagtagt
gattatgagggaatagtaactgtctgggatgtaaatactcgacagagtgtgatggaatat
gaagagcatgaaaaacgggcatggagtgttgatttttcacgcacagaaccctcaaggctt
gtatctggcagtgatgattgtaaggtcaaagtttggtgcacaaaccaggaggctagcgtt
cttaacattgacatgaaagcaaatatatgttgtgtcaagtataatcctggatctagcatt
tatattgcggttggttctgcagaccatcacatccactattatgatttgagaaacaccagc
catccacttcatatctttagtgggcataagaaagctgtttcatatgtgaaattcttgtca
aacaatgagctcgcttctgcttctacagacagcacattgaggttgtgggatgtgaaggaa
aatttgccagttcgcaccttcagaggacacactaatgagaagaacttcgtgggcctctct
gtaaacagtgaatatatttcttgtggcagtgaaacaaacgacgtcttcgtctaccataag
gaaatttccaaacctgtaacatggcataaatttggttcaccagatgtagatgatctggat
gatgatgtaggaccttacttcatcagtgctgtgtgctggaagagtgatagccctacaatg
ttgactgctaacagccaaggaacaatcaaagtgttaacgctctctgcttga

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