Vitis vinifera (wine grape): 100248358
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Entry
100248358 CDS
T01084
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03020
RNA polymerase
vvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100248358
09124 Replication and repair
03420 Nucleotide excision repair
100248358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100248358
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100248358
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100248358
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
100248358
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100248358
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100248358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
Vg_Tdu
Motif
Other DBs
NCBI-GeneID:
100248358
NCBI-ProteinID:
XP_002282298
UniProt:
A5C1N5
A0ABY9C1B4
LinkDB
All DBs
Position
6:complement(join(6375592..6375654,6376379..6376447,6376535..6376600,6377304..6377354,6377501..6377666,6377854..6377969))
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AA seq
176 aa
AA seq
DB search
MFFHIVLERNMQLHPRHFGRHLRDNLVAKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTS
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgttcttccacatagttttggaacgaaacatgcagcttcaccctcggcattttggccgc
cacctacgtgacaatcttgttgccaagcttgtgaaagatgttgagggaacttgcagtggt
cgacatggatttgtggtggcaataacaggtattgagaatgttggaaaagggttaattcga
gatggaacagggtttgtgacttttccagtgaagtaccagtgtgttgtgttccgaccattt
aaaggagagatcttagaagctgttgttaccatggttaacaagatgggattttttgctgaa
gctgggcctgttcaaatttttgtttcaaatcatttgataccggatgatatggagttccaa
tctggagatatgccaaattatacgacgtcagatggttcggttaagatccagaaggacagt
gaagtgcggttaaagataattggaactcgagtagatgctacagaaattttctgcattggt
actataaaagatgatttcttgggtgtcatcaacgatcctgtaacgtcttga
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integrated database retrieval system
