KEGG   Vitis vinifera (wine grape): 100248403
Entry
100248403         CDS       T01084                                 
Name
(RefSeq) protein RDM16
  KO
K12843  U4/U6 small nuclear ribonucleoprotein PRP3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100248403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100248403
Spliceosome [BR:vvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    100248403
SSDB
Motif
Pfam: PRP3 Prp3_C
Other DBs
NCBI-GeneID: 100248403
NCBI-ProteinID: XP_002275798
UniProt: D7T479
LinkDB
Position
13:complement(join(2095195..2096068,2096644..2096804,2096891..2097085,2097310..2097783,2097974..2098258,2100155..2100814))
AA seq 882 aa
MDRSSEKEKSNRRNRESTKDHRDRNRDNRDSRENREHKHRSKEDDEDHRHHHSGGGGDKH
RSEKRSSRDDSKHRDADRHRSSDRGSKRERSHEREGSRDRAADEEVKREREGERSHDSAH
SHKRKERGESEDRGDGGEKRIRVSTERRERRRFEDRVEDVKESNGVERRERRKFEDRVKE
EDLGGFDEVKNVNFDEKSVKKEESEELGDAASNGSGSIGNGVVPEPLNMAPRLVPETSLA
PSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKKAL
QMQKELSEKLKKIPLLNKGASPSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEAVS
LVAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEFAP
LINMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTLKVNINKQK
KDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDAEIIKLKSQ
FGEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWWDVPFLHSG
TYGDTDGGITEDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQKKLRTQRRLA
REKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAEREQAHVDRN
IARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQENRLTGCAV
ISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENEDDDEDENEKPLNSCVLVWQGSVA
KPSFNKFNFHQCRTEAAARKIFSDAGVGHYWDLAVNFSGDQI
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggataggtcttctgagaaagagaaatcgaacagacgaaacagggagtccaccaaggat
cacagagatcgcaatcgtgataatcgcgacagccgcgaaaatcgagaacacaagcaccgt
tccaaggaagacgatgaggatcaccgccatcaccacagcggcggcggcggcgacaagcac
cgaagcgagaaacgttcttccagagacgatagcaagcaccgagacgccgatcgccaccga
tcctccgatcggggatcgaagcgcgagagatcgcacgagagggagggcagtagagatagg
gctgccgacgaagaggtgaagagggagagggagggggagaggtctcatgattcggcgcat
tcgcataagaggaaagagcgcggggagagtgaggacaggggcgatggcggtgagaagagg
attagggtttcgacggagaggagggagaggaggcggttcgaggatagggttgaggatgtg
aaggaatcgaatggagttgagcggagagagaggaggaagttcgaggatagagtcaaggaa
gaagatttgggaggttttgacgaagttaagaatgtgaattttgatgagaaaagtgtgaag
aaggaagagagtgaggagcttggtgatgccgcatctaatgggagtggttcaattgggaat
ggtgttgttccggaaccactcaatatggcaccaaggcttgtacctgagacctctttggcc
cctagtctccctcctcctaccaaggtatcttcaatttctaccacaaatgaaaataaggga
gttagtattaccagatctcatgaggttcctggaaaatctagtacagatgggacaacttca
gctgctggaaaaagtggaaacctatcccttgatgctttagcaaaagctaagaaagcttta
cagatgcagaaggaattgtcagaaaagcttaagaagattcccctgttgaacaagggtgct
agtccaagctcagacggtagcccacagttgaaacctaaggaagaggttacattgccatct
tctactactggaaaactgcttgggtctgtccccttaactactgccactgaggctgtctcc
ctggtggcaatgccaagcacatcaactttacctgctgctgcagcagcttctgtgatgccg
tctgcaagtggcgttggtgctcttgctgggcttacatccatgcccaactttgaagccgta
aaacgtgctcaagagcttgctgccaagatgggatttcgccaggacccagagtttgctcct
cttataaacatgtttcctgggcagatgccaacagatgttgcagtccagcagaagcctgct
aaggcccctgtacttcgcttggatgcattgggtagggagatagatgagcatggaaatgta
gttaatatgcctaagctaaacaatctcagcaccctaaaggtcaacatcaacaagcagaaa
aaggacgcattccaaattcttaaacctgaattagatgtggatccggagtcaaatcctcat
tttgattcaaggatgggtattgataaaaataagcttttgaggcctaagaggatgaatttt
cagtttgtagaggaaggtaaatggtcaagagacgcagagattattaagttaaagagtcaa
tttggagaggcacaagcaaaagagctaaaggcaaagcaagcacagctggcaagggccaag
gcagagcctgatataaatccaaatttgatagaggtatcggaaagagttatcatcaaagaa
aaaccaaaggaccaaattcctgaagttgagtggtgggatgtgccttttttgcattctgga
acttatggcgacactgacggtggtataactgaagataaactaaagatggacaagatcact
atatatctggaacacccgcgtcctattgagcctcctgctgagcctgctccacccccacct
caacccctaaagctaactaagagggagcagaagaaactccgaacacagcggcgtctggca
agggagaaagatagacaggaaatgataagacaaggcctcattgaaccaccaaaaccaaaa
gttaagatgagcaatctcatgaaagttcttggctctgaagcaacccaagatcccaccagg
cttgaaatggaaattcgaagtgcagctgctgagcgtgaacaagctcatgttgacaggaat
attgcacgcaagctcacaccggctgaacgccgggaaaagaaagaaaggaaactttttgat
gacccaaatacactggagactatagtttctgtgtacaagattaatgacctttcacaccct
cagacccgttttaaggttgatattaatgcccaagagaaccgtttgactggatgtgctgtg
atttcagatggtattagtgttgtggttgttgaaggtgggagcaaacccatcaaaaggtat
gggaagcttatgcttaagcgtataaactgggcagcagctgtggaaaatgaagacgacgat
gaagatgaaaatgagaagcctctcaacagttgtgtgttagtatggcagggaagcgtggct
aaaccaagcttcaataagtttaattttcaccagtgcaggactgaagctgcagcacggaaa
attttttctgatgctggcgtgggtcactattgggatcttgctgttaacttctcaggtgac
caaatataa

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