Vitis vinifera (wine grape): 100248403
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Entry
100248403 CDS
T01084
Name
(RefSeq) protein RDM16
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100248403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100248403
Spliceosome [BR:
vvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100248403
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
100248403
NCBI-ProteinID:
XP_002275798
UniProt:
D7T479
A0ABY9CZW9
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All DBs
Position
13:complement(join(2095195..2096068,2096644..2096804,2096891..2097085,2097310..2097783,2097974..2098258,2100155..2100814))
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AA seq
882 aa
AA seq
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MDRSSEKEKSNRRNRESTKDHRDRNRDNRDSRENREHKHRSKEDDEDHRHHHSGGGGDKH
RSEKRSSRDDSKHRDADRHRSSDRGSKRERSHEREGSRDRAADEEVKREREGERSHDSAH
SHKRKERGESEDRGDGGEKRIRVSTERRERRRFEDRVEDVKESNGVERRERRKFEDRVKE
EDLGGFDEVKNVNFDEKSVKKEESEELGDAASNGSGSIGNGVVPEPLNMAPRLVPETSLA
PSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKKAL
QMQKELSEKLKKIPLLNKGASPSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEAVS
LVAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEFAP
LINMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTLKVNINKQK
KDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDAEIIKLKSQ
FGEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWWDVPFLHSG
TYGDTDGGITEDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQKKLRTQRRLA
REKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAEREQAHVDRN
IARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQENRLTGCAV
ISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENEDDDEDENEKPLNSCVLVWQGSVA
KPSFNKFNFHQCRTEAAARKIFSDAGVGHYWDLAVNFSGDQI
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggataggtcttctgagaaagagaaatcgaacagacgaaacagggagtccaccaaggat
cacagagatcgcaatcgtgataatcgcgacagccgcgaaaatcgagaacacaagcaccgt
tccaaggaagacgatgaggatcaccgccatcaccacagcggcggcggcggcgacaagcac
cgaagcgagaaacgttcttccagagacgatagcaagcaccgagacgccgatcgccaccga
tcctccgatcggggatcgaagcgcgagagatcgcacgagagggagggcagtagagatagg
gctgccgacgaagaggtgaagagggagagggagggggagaggtctcatgattcggcgcat
tcgcataagaggaaagagcgcggggagagtgaggacaggggcgatggcggtgagaagagg
attagggtttcgacggagaggagggagaggaggcggttcgaggatagggttgaggatgtg
aaggaatcgaatggagttgagcggagagagaggaggaagttcgaggatagagtcaaggaa
gaagatttgggaggttttgacgaagttaagaatgtgaattttgatgagaaaagtgtgaag
aaggaagagagtgaggagcttggtgatgccgcatctaatgggagtggttcaattgggaat
ggtgttgttccggaaccactcaatatggcaccaaggcttgtacctgagacctctttggcc
cctagtctccctcctcctaccaaggtatcttcaatttctaccacaaatgaaaataaggga
gttagtattaccagatctcatgaggttcctggaaaatctagtacagatgggacaacttca
gctgctggaaaaagtggaaacctatcccttgatgctttagcaaaagctaagaaagcttta
cagatgcagaaggaattgtcagaaaagcttaagaagattcccctgttgaacaagggtgct
agtccaagctcagacggtagcccacagttgaaacctaaggaagaggttacattgccatct
tctactactggaaaactgcttgggtctgtccccttaactactgccactgaggctgtctcc
ctggtggcaatgccaagcacatcaactttacctgctgctgcagcagcttctgtgatgccg
tctgcaagtggcgttggtgctcttgctgggcttacatccatgcccaactttgaagccgta
aaacgtgctcaagagcttgctgccaagatgggatttcgccaggacccagagtttgctcct
cttataaacatgtttcctgggcagatgccaacagatgttgcagtccagcagaagcctgct
aaggcccctgtacttcgcttggatgcattgggtagggagatagatgagcatggaaatgta
gttaatatgcctaagctaaacaatctcagcaccctaaaggtcaacatcaacaagcagaaa
aaggacgcattccaaattcttaaacctgaattagatgtggatccggagtcaaatcctcat
tttgattcaaggatgggtattgataaaaataagcttttgaggcctaagaggatgaatttt
cagtttgtagaggaaggtaaatggtcaagagacgcagagattattaagttaaagagtcaa
tttggagaggcacaagcaaaagagctaaaggcaaagcaagcacagctggcaagggccaag
gcagagcctgatataaatccaaatttgatagaggtatcggaaagagttatcatcaaagaa
aaaccaaaggaccaaattcctgaagttgagtggtgggatgtgccttttttgcattctgga
acttatggcgacactgacggtggtataactgaagataaactaaagatggacaagatcact
atatatctggaacacccgcgtcctattgagcctcctgctgagcctgctccacccccacct
caacccctaaagctaactaagagggagcagaagaaactccgaacacagcggcgtctggca
agggagaaagatagacaggaaatgataagacaaggcctcattgaaccaccaaaaccaaaa
gttaagatgagcaatctcatgaaagttcttggctctgaagcaacccaagatcccaccagg
cttgaaatggaaattcgaagtgcagctgctgagcgtgaacaagctcatgttgacaggaat
attgcacgcaagctcacaccggctgaacgccgggaaaagaaagaaaggaaactttttgat
gacccaaatacactggagactatagtttctgtgtacaagattaatgacctttcacaccct
cagacccgttttaaggttgatattaatgcccaagagaaccgtttgactggatgtgctgtg
atttcagatggtattagtgttgtggttgttgaaggtgggagcaaacccatcaaaaggtat
gggaagcttatgcttaagcgtataaactgggcagcagctgtggaaaatgaagacgacgat
gaagatgaaaatgagaagcctctcaacagttgtgtgttagtatggcagggaagcgtggct
aaaccaagcttcaataagtttaattttcaccagtgcaggactgaagctgcagcacggaaa
attttttctgatgctggcgtgggtcactattgggatcttgctgttaacttctcaggtgac
caaatataa
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