Vitis vinifera (wine grape): 100248407
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Entry
100248407 CDS
T01084
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100248407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100248407
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100248407
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100248407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100248407
NCBI-ProteinID:
XP_002279241
UniProt:
F6HYI8
A0ABY9CUF3
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Position
11:complement(7937537..7938349)
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AA seq
270 aa
AA seq
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MSDVLVNDTFHIRDVWDDNLEDEIRLIRGLLDDYPYIAMDTEFPGVVLRSVGNFKNNNEY
NFQTLKTNVDLLKLIQLGLTFSDEHGNFPTCGTERYCVWQFNFREFNLNEDVFAHDSIEL
LKQSGIDFKKNNEKGVDARRFSELLMSSGIVLNESVHWVTFHSGYDFGYLLKLLTSQNLP
ETQAGFFELIRIYFPILYDIKHLMKFCNSLHGGLNKLAELLGVERIGSCHQAGSDSLLTC
CTFMKLKKDFFNGSPEKYAGVLYGLGVESG
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgtgctcgtgaatgatacgtttcatatcagggacgtttgggatgataatctt
gaagatgagattcgattgattcgtggacttttagatgattacccttacatagctatggat
accgagtttcccggtgttgtacttcgttcagtagggaatttcaagaacaacaatgagtat
aattttcagaccctgaagaccaacgttgatcttttgaagttgattcaattgggtcttaca
ttttctgatgaacatggaaattttcccacctgtggaactgaaaggtattgcgtatggcaa
tttaatttccgggagtttaacctcaacgaggatgtgtttgctcatgactccatcgaactg
ttaaagcagagtggtatcgattttaagaagaacaatgaaaaaggtgtggatgcacgtcgg
tttagtgaattgctaatgtcttcaggaatcgtattgaatgagagtgtgcattgggttaca
tttcatagtgggtatgattttggctacttgctgaagctacttacttcccagaatctgccc
gagacacaggccggtttctttgagctgatcagaatatacttccctatactttatgatatc
aagcatctcatgaagttctgtaatagccttcatggtgggttgaacaagctcgcagagctg
ttgggtgttgagagaattggttcttgtcatcaagctggttcggatagtttgctcacatgt
tgtacattcatgaaattgaaaaaagatttctttaatgggtctcctgagaaatatgctggt
gtgttgtatggtcttggtgttgagagtggatga
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