Vitis vinifera (wine grape): 100249315
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Entry
100249315 CDS
T01084
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100249315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100249315
Spliceosome [BR:
vvi03041
]
Common components
Common spliceosomal components
SR proteins
100249315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
FlhF_2nd
Motif
Other DBs
NCBI-GeneID:
100249315
NCBI-ProteinID:
XP_002283865
UniProt:
A0ABY9D617
F6I4L9
LinkDB
All DBs
Position
14:complement(join(1918376..1918420,1918587..1918670,1918795..1918828,1920828..1920985,1921064..1921120,1921279..1921328,1926455..1926512,1926833..1926879,1926961..1927066,1927191..1927265,1927906..1927971,1931879..1931965))
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AA seq
288 aa
AA seq
DB search
MSSRSSRTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAED
AIYGRDGYNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYS
ASWQDLKDHMRRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAY
IRVREYEPRSFSRSPSRSPSVSRSRSPRRSRSYSYSNHSSGRSLSRSVSSQARSRSVSRS
RSPLISPRRHKRVSRSPKKYRSPSRSLSGSRSPSRSSYRSRSADSRSD
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgttctagccgcactgtctatgttggcaatcttcctggtgatattcgtgag
agagaagtagaagatctgttttacaagtatgggcccattgttgacattgatttgaagatc
cctccaagaccaccaggctatgcttttgttgagttcgaagatgctcgtgatgccgaagat
gctatttatggtcgggatgggtataattttgatggacatcgactgcgagtcgaacttgct
catggtgggagaggacagtcatcatcagtggaccactatagcagttacagtagcagtagc
cgtggtggactttcacggcactctgaatatcgagtattggttactggattaccttattct
gcttcctggcaagatctaaaggaccatatgcgtcgagctggggatgtttgtttctcccaa
gtgttccgtggtcgcggagggatgactggaattgtggattatacaaactatgatgatatg
aaatatgctataaggaagcttgatgactctctgtttaagaatcaattttctcgggcttat
atacgggtgagggagtatgaacctagaagcttctctcgaagtcccagtcgtagcccatct
gtgtcaagaagcagaagcccccgtcgcagtcgtagctatagttattcaaatcattcatca
ggcagatctctttcgaggtctgtttcttcacaggcacgctcgagatcagtttcaaggtcc
agatctcccttaatatctcctcgtcgtcacaagcgggtgagcagaagcccaaagaaatac
aggagcccaagcaggagcttatctggatctcgttcaccctcgaggagttcttacaggagc
agatcagctgactcgaggagtgattga
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integrated database retrieval system
