Vitis vinifera (wine grape): 100249448
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Entry
100249448 CDS
T01084
Name
(RefSeq) chromatin structure-remodeling complex protein BSH
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03082
ATP-dependent chromatin remodeling
vvi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100249448
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100249448
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vvi01009
]
100249448
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100249448
03036 Chromosome and associated proteins [BR:
vvi03036
]
100249448
Protein phosphatases and associated proteins [BR:
vvi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100249448
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100249448
SWI/SNF complex
100249448
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100249448
PBAF complex
100249448
SWI/SNF complex
100249448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
Motif
Other DBs
NCBI-GeneID:
100249448
NCBI-ProteinID:
XP_002270283
UniProt:
D7T6B3
LinkDB
All DBs
Position
5:complement(join(3048950..3049058,3049554..3049616,3049722..3049804,3049941..3049979,3051725..3051808,3051923..3051970,3052072..3052143,3054347..3054441,3054851..3054939,3055022..3055071))
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AA seq
243 aa
AA seq
DB search
MKPLPSTSSKNPVKFRMPTADNLVPIRLDIEIDGHRFKDAFTWNPSDPDSEVVVFAKRTV
KDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLIKDQFLWDL
NNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETRISKKGRRG
AEHIPASKASGTALDLMKLFGNKSSIIRKRREWDVYEPIVDILSNEEVDVLEAREDRNAR
RID
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccctgccctcaacatcttccaaaaaccctgtcaagtttagaatgcctactgca
gataatttagttccaattcgtttggacattgagatcgatggccaccgcttcaaagatgcc
tttacttggaacccttctgaccctgactcagaggtggtggtgtttgcaaaaaggacagta
aaagatttgaagcttcctccagcattcataacacaaattgctcaatccattcaatcacag
cttgcagaatttcgatcatttgaagggcaagatatgcaaactggcgagaagattgttcca
atcaagcttgaccttcgtgtaaatcatactctcataaaggatcagtttttgtgggatttg
aacaactttgagagtgatcctgaagagtttgcaagaactttctgcaaagatttgggggtt
gaggaccctgaagttggacctgcaattgctgttgcaatcagagaacagctatacgagatt
gcaattcaaagtgtaacttcagcaagagaaaccagaataagtaagaagggccgcagagga
gcagaacatatcccagctagcaaagcaagtgggactgcattggatttgatgaagttgttt
ggtaacaagtcaagcatcattcggaaaagaagagaatgggatgtatatgaacccattgtt
gatattctgtcaaatgaggaagtggatgtccttgaagcaagagaagacaggaatgctcgg
agaattgactaa
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integrated database retrieval system
