KEGG   Vitis vinifera (wine grape): 100249625
Entry
100249625         CDS       T01084                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03410  Base excision repair
vvi03420  Nucleotide excision repair
vvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100249625
   03410 Base excision repair
    100249625
   03420 Nucleotide excision repair
    100249625
   03430 Mismatch repair
    100249625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100249625
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100249625
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100249625
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100249625
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_30 RCF1-5-like_lid AAA_22 PTCB-BRCT Rad17 AAA_19 AAA_24 nSTAND3 AAA_assoc_2 BRCT_2 AAA_18 RuvB_N AAA_5 AAA_14 Zeta_toxin AAA_16 AAA_17 Gp44_lid Sigma54_activ_2 RsgA_GTPase AAA_28 NTPase_1 TsaE DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 100249625
NCBI-ProteinID: XP_059593579
LinkDB
Position
6:join(18225127..18225141,18226922..18227053,18228057..18228428,18228518..18228585,18228858..18228933,18229016..18229077,18229159..18229307,18229986..18230137,18230253..18230441,18230558..18230679,18230773..18230980,18232692..18232745,18237094..18237263,18237989..18238079,18240501..18240682,18241052..18241091,18242021..18242145,18247044..18247116,18247214..18247306,18247373..18247619,18248133..18248189,18248303..18248451)
AA seq 941 aa
MAASKSDIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRR
KTSKYFQKPKDEKEMEELPAKRKTQKGTKESLNPPPSKKIRRVVDDDDDDFVLHKSDDEK
VDKDTEPPIKSGGRGRGGRGALVTPAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAS
DCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKE
LGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVVLATPKKSPQKVEKKVDQVVNSSG
KRTVLAATTPKHIYQTIGHASLTWTEKYKPKVPNDIIGNQSLVKQLHEWLAHWNEQFLHT
GTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKANAKID
KGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKIS
KIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVANAEGLQVNEIALEELA
ERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDKLFGFNGGKLR
MDERIDLSMSDPDLVPLLIQENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQ
IRRYRQWQLSQAGSFASCITPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNKRLLE
DLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPLRMLPKDDAVQKVVEFMDLYSISQED
FDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKGSSSRLVRAADLITLPGIKKAPKKRI
AAILEPVDDELARENGDALAESEEENSSDTDDMDTANGDKKLPVDLQNLNSKGIKVELDL
KGAGSSSAKKTPAGRGRGGGSASTEKKGGRGSGAAGAKRKR
NT seq 2826 nt   +upstreamnt  +downstreamnt
atggctgcgtccaagtcggatattaggaagtggtttatgaaaaaacatgacaacgacaat
ggcaatccgttgaagcctgcaaaacctgagcctaaagcttcacaatcagggaaaccttct
ccagctactgtgcagcaggagaaacctgtgcatggaggccaagaaagttcttgcagaagg
aagactagcaagtattttcaaaagcctaaagatgagaaggaaatggaagaactcccagct
aaaagaaagacccagaagggtactaaggaatcattgaaccccccaccttccaaaaaaatt
cgccgagttgtcgatgatgatgatgatgactttgtcttgcataaaagtgatgatgagaaa
gttgataaagatacagaacctcctattaaatctggtggaaggggtcgtggtggaagaggt
gcattggtaacaccagctggtggaagaggcagaggtggtggacgcggtggatttatgaat
tttggagaaaggaaggatcctccacacaaaggagaaaaggaagtccctgaaggtgcttct
gattgtttggctggtttgacatttgtaattagtggaacccttgacagtttggaaagggaa
gaagcagaggatctgatcaagcgccatggtggtcgtgttactggatctgttagcaaaaaa
acaaattttcttttatgtgatgaagatattgggggcaataagtctgctaaggccaaagag
ctgggcactgcctttcttaccgaggatggactgtttgatatgatctgtgcatcaaatcat
gcaaaagcacctgcacgaggggaaccaaaaaagtctttggataaggttgtgttggcaaca
ccaaagaaaagtcctcagaaagtggaaaagaaagtggatcaagtggtcaactcttcagga
aaacgcacagttttggcagctaccactcctaagcatatatatcaaactattggacatgct
tcattgacatggactgaaaaatataagccaaaggttccaaatgacatcattgggaatcag
tcactggttaaacagcttcatgaatggttggcacattggaatgagcaatttcttcatact
ggcactaagggaaaagggaaaaaacagaatgattctggtgctaaaaaagctgtactgtta
agtggaacacctggtataggaaagactacatcagcaaagttggttagtcagatgctgggt
ttccaggcaattgaggtaaatgccagtgataatcgtggaaaggctaatgccaaaattgat
aaaggaattggtggaagcaatgcaaattctataaaggaactcgtcagtaatgaagctttg
ggtgctcacatggataggtcaaagcatccaaagactgtgctgattatggatgaggttgat
gggatgtctgctggagatagagggggagtggctgatcttattgctagcatcaagatttcc
aaaattcccatcatctgcatctgtaatgatcgctacagtcagaaactaaaaagtctagtg
aactactgtttgcttctcagcttccgaaaacctacaaaacaacagatggcaaagaggtta
ttgcaagttgcaaatgcagaaggccttcaagtcaatgagattgcccttgaggaacttgca
gaaagagttaatggagatatgcgcatggcactaaaccagttgcagtacatgagcctctcc
atgtcagtcattaaatatgatgatgtaaggcagcggcttctgagcagtgcaaaagatgaa
gatatttcaccatttgtggctgttgataagctgtttggttttaatgggggaaagctgaga
atggatgagcggattgacctcagcatgagtgaccctgatctagttccacttcttattcag
gaaaactatatcaattataggccaactttggctggtaaggatgacaatggggtgaaacgg
atgagcttgcttgctcgtgctgctgagtctattggtgatggggatataattaatgtacag
attcgaagatatcgacagtggcaactctctcaagctggctcctttgcatcctgtataact
cctgctgcactcttgcatgggcaaagggagacacttgaacagggagaacgcaattttaat
agatttggtggctggctgggaaaaaactcaacaatgggaaaaaataagagactcttggag
gatctgcatgttcatcttcttgcttctcgtgaatctaattctggaaggggaaccttgcga
attgattaccttactctaattctgaaacggttgactgatccactacgcatgctgcctaag
gatgacgctgttcagaaagttgtggagttcatggatttatactctataagtcaggaggac
tttgatactattgtggagttatctaaatttcaggggcacccaagtccactggagggcata
cagccagctgtcaagtcagctttaacaaaggcttacaataaaggaagtagctctcgcttg
gtgcgtgcagctgatttaatcacacttcctggaatcaaaaaggcccccaagaagcgaatt
gctgcaattctagagccagtagatgatgaattggcaagagagaacggtgatgcattggcg
gaaagtgaagaagaaaactcttcagacacagatgacatggacactgctaatggtgataag
aagctgccagtggatctccagaatctcaactctaaaggaattaaagtagaactagactta
aaaggtgctgggagttctagtgccaagaaaacaccagcaggcagaggaagaggaggaggt
tctgcatccacagagaagaaagggggcagaggctcaggggctgctggtgccaagagaaag
aggtag

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