Vitis vinifera (wine grape): 100249828
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Entry
100249828 CDS
T01084
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100249828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100249828
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100249828
mRNA degradation factors
5'-3' decay
Lsm complex
100249828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100249828
NCBI-ProteinID:
XP_002271476
UniProt:
A5CA52
LinkDB
All DBs
Position
9:complement(join(710079..710156,711161..711223,711317..711432,711525..711593,715100..715160))
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AA seq
128 aa
AA seq
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MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccggaagatatctacctatccacatctcttgctagctatcttgac
aagaaacttcttgtactgctgcgagataatcgaaagcttttgggaatacttcgctccttt
gatcaatttgcaaatgccgttcttgagggtgcatgtgagcgagtaattgtcggtgatctt
tattgtgacatccctttaggtttatatgtaattcgaggggagaatgttgttttgattggc
gagctggacttggagaaggaggaacttcccccacatatgactcgagtttcagcagcagag
attaaaagggcacagaaagcagaaagggaggcgtcagatcttaaaggcaccatgaggaaa
agaatggagttcctcgatttggattga
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