Vitis vinifera (wine grape): 100250037
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Entry
100250037 CDS
T01084
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1 isoform X2
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100250037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100250037
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
100250037
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
100250037
NCBI-ProteinID:
XP_010658217
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All DBs
Position
13:complement(join(1078966..1080909,1081614..1081772,1082237..1083625,1084004..1084254,1084533..1084581))
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AA seq
1263 aa
AA seq
DB search
MRKRNLCRNQHPFHAHPFEAFYFGSWQAIELMRIEDGTVALHLAESEYVIEEKSPIPNLR
IRPRKATLSDCTCFLRPGTEITVLWTLQQSESSDEENREPVWIDAKISSIERRPHEPECS
CQFFVNFYITQDPLGTEKGTLSKDISVVELDQISILQKLGKYPCEDEHYRWKFSEDCSLL
QRTKLFLGKFSSDLSWLVVTSVLKQAVFDVRSVQNRIVYQIVGGDHDKVSLNAVNFRVDN
GISTPVIFPFVPADTIEADPLNGTNEAGPLPFCDIVDLRRSKRRNVQPDRFFSLGGFSES
DIGSVRAGIHKVDYWRKEEMPLALPDEGDVHSIFSEKHIIDYEKGAHSLQIDSYEDFLVC
KSKDRSREVKPILAAQNEDQHQFAIVPVPLIIEPIAHGEDHLHDETPWNESGEIGEISPK
YYCTNGVPKLQRKNMSDLYMEVESRWEGKGPIRKLRRKRGFTIRTKTESYGEVRPHKKRP
FSEPGYKEVIEAYMKNIESTINKEQPLVIDQWKELQVRNDLNQRRDCNSPSSVGDQEESS
ETEMLWREMEFSIASSYLLEENEGSNVEVLKEVVQESSNISEQVCQHEYILDEEIGVLCQ
LCGFVSTEIKDVSPPFFQPTGWITNREWRDEENSKRKQAENDGFNLFSIPASSDTPLSEG
NDNVWALVPDLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGGCVISHSPGAGKT
FLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKH
KVETSPGIPRPNQDVMHVLDCLEKIQKWHAHPSILLMGYTSFLSLMREDSKFIHRRYMGE
VLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNFSEYFNTLCLARP
KFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNVPEEQIEGLNMLR
NLTSKFIDVYEGGSSDNLPGLQVYTLLMKSTTIQQQFLSKLQKKKDEYKGYPLELELLVT
LGSIHPWLITTAACADKYFSREELLELKKHKDDVKKGSKVKFVLSLVNRCIIRKEKILIF
CHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQFEEPGGASKVLLASIT
ACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVYQLLETDTLEEEKNSR
TNWKEWVSSMIFSEAFVEDPSCWQAEKIEDDLLREIVEEDWAKSIHMIMKNEKASNGLIR
GKE
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagaggaatttatgtcgaaaccagcatccatttcatgcacatccttttgaggca
ttttactttgggtcatggcaagccatagaactcatgaggattgaggatggaacagtagcc
ctacatctggcagagagtgagtatgtaattgaggagaaaagtccaatcccaaaccttcgg
ataaggccaaggaaagcaactttgtctgattgtacttgctttctgaggcctggcacagaa
ataaccgtgctttggaccttgcaacagtcagaaagttcagatgaagaaaatcgagagccg
gtgtggattgatgctaagataagttccattgagaggaggcctcacgagcccgaatgttca
tgccaattttttgtcaacttctacattacccaagacccccttggcacagagaagggaaca
cttagcaaggatatcagtgttgtagaactcgatcagatttctatcctccaaaaacttgga
aaatatccttgtgaagatgagcactaccggtggaaattttctgaggactgctctttgctg
caaagaactaaattgttcttggggaaattctcatctgatctttcatggcttgttgttaca
tcagttttaaagcaagctgtatttgacgtaaggtcagtgcaaaataggattgtctatcaa
attgtgggtggtgatcatgataaggtttcattaaatgctgtaaattttagagtagacaat
ggaatttccactcctgtcatattcccctttgttcctgctgatactattgaggctgatcct
ttaaatggcaccaatgaagctggaccattaccattctgtgatattgtggacttacggcgc
tccaagcgtcgaaatgtacaacctgatcgtttctttagcttaggtggcttttcagagtcg
gatattgggtcagttcgagcggggatacacaaggtagactactggagaaaggaagaaatg
ccattggcattgccagatgagggggacgtgcattcaattttttcagaaaagcatattatt
gattatgaaaaaggggcccactctcttcaaatagattcctatgaggatttccttgtctgc
aaaagcaaggacaggtcaagggaggtaaagccaattctggctgcacaaaatgaagatcaa
catcaatttgctattgttcctgtgcctctcattattgaaccaatagcacatggagaagat
catctccatgatgagactccttggaatgagtcaggagagattggggagatatctcccaag
tattactgcacaaatggtgttcctaaattacagcgtaagaatatgtctgatttatatatg
gaggtcgagagcagatgggaagggaaaggtccaattaggaaactccgaagaaaaaggggt
tttactatacgtacgaaaacagagagttatggtgaagtaagacctcataaaaagagaccc
ttcagtgaacctgggtataaggaagtgatagaagcttacatgaaaaacatagaatccaca
atcaataaagaacagccacttgttatcgaccaatggaaagaacttcaggtgagaaatgac
ttgaaccaaagaagggactgcaactcaccatcttcggttggggatcaggaagaaagctca
gaaactgaaatgttgtggagagaaatggaattctccattgcatcatcttatcttctagaa
gaaaatgaggggtcaaatgttgaagtcttgaaggaggttgtgcaagaatcaagtaacatt
agtgaacaagtttgccagcacgaatacatattggacgaagaaattggggttctatgtcag
ttatgtggctttgtgagcactgaaataaaagatgtctcaccccccttttttcaacccact
ggttggatcacaaacagagaatggcgtgatgaagaaaattcaaagcgtaagcaggctgaa
aatgatggcttcaatcttttctccattcctgcttcctctgacacacccttgtcagaagga
aatgacaatgtgtgggccttagtacctgatctgagaaagaaattacggttacaccagaag
aaagcttttgagtttctatggaaaaatattgctggctctatggtaccagcactaatggaa
caagaagtcaagagaagaggtggttgtgttatttctcattctcctggagctggaaaaact
tttcttgttatctcgttcctggtgagctacttgaagttatttcccggaaaacggcctttg
gtccttgctccaaagacaacactctatacctggtacaaagaaattattaagtggaaggtt
cctgttccagtttatcaaatccacggttgtagaacctacagatatgaaatctacaaacac
aaagtggaaacttctccagggattccaagaccgaaccaagatgttatgcatgttcttgat
tgcctagagaaaatacagaagtggcatgcacatccaagtattcttctcatgggttatacc
tcgtttctgtcattgatgcgagaagattcaaagtttatccataggagatacatgggtgaa
gttctgcggcaaagtccaggaattcttgtactcgatgaagggcacaacccaagaagcaca
ggatcaaggttaaggaaagctctgatgaaagttaaaacaaacctgagaattttgctttca
ggtacattgtttcagaataatttcagtgaatatttcaacaccctttgcttagcaagaccg
aagtttgtcaatgaggtgttaagggaattggacccaaaatttaagaggaacaagaatcgg
aggaaaagaagatacagttcaacagaatctcgggcaagaaaattcttcacagatgagatt
gcaaagcgaatcaattcaaatgtgccagaagaacagatagagggcctaaacatgttaagg
aatctcactagtaaatttatagatgtgtatgaaggtggaagttctgacaacctacctggt
ttacaagtttacaccttgttgatgaaatcaactactatacaacaacagtttctgtcaaaa
cttcagaagaaaaaggatgaatataaaggatatcctctggaattggagcttttggtaacc
cttggatcaatacatccttggttgatcacaactgctgcctgtgctgataaatactttagt
agggaggaattgctggagcttaagaagcacaaggatgatgtgaagaaggggtcaaaagtg
aaatttgttctaagtcttgtgaatagatgtatcattagaaaggaaaagattttgatcttt
tgccataacatctcacccattaatttatttgtagatatatttgataagctctataagtgg
aagaagggtgaagatgttttggtccttcaaggggacctagagctatttgaacggggcaga
gtgatggatcagtttgaagaaccaggtggtgcctcaaaagtactacttgcttccattaca
gcttgtgctgaaggcattagcttaactgcagcttcacgggtgatattgttggacacagag
tggaatccttcaaagcaaaagcaagctgttgcacgggcatttcggcctggtcaggagagg
gtggtttatgtctatcagctcttggaaacagacacactggaagaagaaaagaatagtagg
accaactggaaggagtgggtttcaagtatgatatttagtgaagcatttgtggaggaccct
tcatgctggcaagcggaaaaaattgaagatgatttattaagggagatagtcgaggaggac
tgggctaaatcaatccatatgataatgaaaaacgagaaagcttcaaatgggttgatcaga
ggtaaagaatag
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