Vitis vinifera (wine grape): 100250120
Help
Entry
100250120 CDS
T01084
Name
(RefSeq) RNA polymerase sigma factor SigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100250120
Transcription machinery [BR:
vvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
100250120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Response_reg_2
Motif
Other DBs
NCBI-GeneID:
100250120
NCBI-ProteinID:
XP_002268709
UniProt:
E0CUJ7
LinkDB
All DBs
Position
16:join(24440878..24441588,24441704..24441850,24442092..24442328,24442628..24442891,24443054..24443251)
Genome browser
AA seq
518 aa
AA seq
DB search
MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE
TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED
LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS
IQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLL
EVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYF
QEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVS
FGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHAT
TQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG
EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgactgtttctagctcagcttcagcttctcgaaccccatttggattgaac
gcaaaattttcaaatcatcaaacccctttgaggaggcccctagttttggcattcaaagca
gataaagccaagaacatagctctggttactccccatgagccaatccctttacctatagag
acttctaaagatcataagaagagacttcgtagggcttccaagccttcaaagagagtaaaa
gcggtcagtacagatgaagtatcgccatgtagtgtagaattggattacaatgaagctgct
gccaaacttgaaaatatatacaagcttagccctgcaactgatgtttcagaggcagaagat
ttagaacgtgtcgttaggagagggcgacagaggaggaagagagttactttggctgatgac
aaggcagagaaggaggttagtgataatgtagtgaggatccataataagaaaccgaaacga
ttgagtcttgagaagaggattgctttgagtaagatgaagcaagaaaaagcagttgcttca
attcaaaagaaaagggacagtaaaaatgaagatgaaaatattgatgtgcttgttagggag
tactcggcttctactgacttggtcagtttggactggaagaaaatgaagataccacccgtg
cttcctccctcagagcatgcatggctattcaagctaatgcagcccatgaagggactcctt
gaagtgaaagacaacttacaaaaggatttggggagagaaccaaccgatggggaattagca
gaggccatgagtatgagtgcagttcaagtaagaagacacatggaagttggtcaagcagca
agaaacaagctgattaagcacaatcttcgactggttttgtttgtaatcaacaagtacttt
caagagtttgccaatggcccaaagtttcaagacctgtgtcaagcaggagtgaagggcctt
atcacagccatcgatcgctttgaaccaaaaaggagtttccggctctcaacctatggtctg
ttttggattaggcatgccatcatgcgctccatgacactctcaagctttacacgcgtctcc
tttggccttgagtcggttagggtagaaatccaaagagcaaaactagagttgttgttcaag
ctccaaagattaccaacagaggaagagataatagaaaaggttggaatctcccctgagagg
taccatgaagtgatgagggcctcaaaatccgtcctctctctccatgcaaggcatgcaacc
acacaagaagagtacatcaatggaattacagatgttgaaggtgttgggggtgataggggg
cggcaacttgctcttctcagacttgctcttgatgatgtgctcgattctctgaagccaaag
gagagcttggtgatgagacagagatatggtcttgatggtaagggtgatcggacactgggg
gagattgcaggaaacctaagcatctcaagagaaatggttcgaaagcatgaggtgaaggct
ctcatgaagctcaagcatccagcacgagtggattatcttcgccaatacatattctaa
DBGET
integrated database retrieval system
