KEGG T01084: 100250121

Vitis vinifera (wine grape): 100250121

Entry

100250121         CDS       T01084

Name

(RefSeq) protein DAMAGED DNA-BINDING 2

K10140

DNA damage-binding protein 2

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03420

Nucleotide excision repair

vvi04120

Ubiquitin mediated proteolysis

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100250121
  09124 Replication and repair
   03420 Nucleotide excision repair
    100250121
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vvi04121]
    100250121
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100250121
Ubiquitin system [BR:vvi04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100250121
DNA repair and recombination proteins [BR:vvi03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      100250121

SSDB

Motif

Pfam:

WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_EML WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st

Other DBs

NCBI-GeneID:

100250121

NCBI-ProteinID:

XP_002279214

UniProt:

A5BX89

LinkDB

Position

6:join(7272765..7272998,7273091..7273181,7273525..7273652,7273907..7274029,7274141..7274229,7274361..7274481,7275180..7275271,7275850..7275979,7276220..7276468,7276562..7276758,7277526..7277751)

AA seq 559 aa
MAPRTRRGSFPRVVIERDTESEKSSSSEEEEDPEPEVQEEEESEELAEVENGENVEEGLG
SKKKERVPITIALTKVCKVCKRKGHEAGFKGATYIDCPMKPCFLCKMPGHTTMTCPHKVA
TEHGVIPAPNRNTRSSLDYVFRRQLQPDIPAIKTAFIVPNQVDCAVIRYHSRRVTCLEFH
PTNNNILLSGDKKGQLGVWDYNKVHEKTVYGNIHHCILNNMRFKPTNDETIYAASSDGTI
SCTDLETGISSSLMNLNPNGWEGPSTWRMLYGMDINSEKGLVLVADNFGFLYLVDTRSNN
QTGEAILIHKKGSKVVGLHCNPLQPELLLSCGNDHFARIWDMRRLEAGSSLHNLPHGRVV
NAAYFSPQSGCKILTTSQDNRIRVWDSIFGNLNSPSREIVHSHDFNRHLTPFRAEWDPKD
PAESLVVVGRYISENYNGAALHPIDFIDISTGQLVAEVMDPNITTISPVNKLHPRDDVLA
SGSSRSLFIWRPRDKSEPVQQKNEKKIVLCASEKKTRRKFGGVDSDNDSDDDTFSSKGKN
FKSKKLGSKPTPKSLRTKR

NT seq 1680 nt +upstreamnt +downstreamnt
atggctccgcggacaagaagagggtcttttcctagagttgtaattgagagagatacggag
tctgaaaaaagttcatcatcagaagaagaggaggacccagaaccagaagtgcaagaagaa
gaagagagtgaagaacttgcagaagttgaaaatggagagaatgtggaagagggtttgggt
tcaaagaagaaagagagagtgcccatcactattgctctcacgaaagtctgcaaagtatgc
aagcgaaagggtcatgaagcaggattcaagggagctacttacatagactgcccaatgaag
ccctgctttctctgcaagatgcctggccacactacaatgacttgcccacacaaagtggca
actgagcatggtgtcatcccagcacccaatagaaatactaggagttctttggattatgtt
ttcagacggcagcttcaacctgatattcctgcgatcaaaacggcctttatcgtccccaat
caagtggattgtgcagttattagatatcacagtaggcgggtcacatgcctggagttccac
ccaacaaacaataacattcttttatcaggagacaagaaagggcaacttggagtctgggat
tacaataaagttcatgaaaagacagtttatggaaacatacaccactgtatacttaataac
atgaggttcaaaccaacaaatgatgaaacaatatatgctgcatcctcagatggaaccatc
agttgcacagacttggagactggaatttcatcatctttgatgaaccttaaccctaatggg
tgggagggcccaagcacttggaggatgctctatggcatggatattaactcagagaaaggt
cttgtgcttgttgctgataactttggatttctctacttggtggatacccgctccaacaac
caaactggggaggctattttgatccataagaaaggtagcaaagtcgttgggcttcactgc
aatcctcttcaaccagagcttcttttgagttgtggcaatgatcactttgctcgtatatgg
gatatgcggcgattagaagctggatcttctcttcacaaccttccacatggccgtgttgtt
aatgctgcatatttctctccgcaatccggttgcaaaattcttactacatctcaagataac
cgtattcgtgtatgggattctatctttggcaatttgaactccccaagtagagaaattgta
catagtcatgatttcaatcgacatttgactccttttcgtgctgaatgggatccaaaggac
ccggcagagtcccttgtggttgttggtcgttacataagtgaaaattataatggagctgcc
ttgcatcccattgatttcatagacatcagcactgggcaactggttgctgaggtcatggat
ccaaacatcacaactatcagtcctgtgaacaagctacatccacgagacgatgttctggca
tctggcagttcaaggtctcttttcatctggaggcccagggacaagtctgagcctgtacaa
cagaagaatgaaaagaagattgttctttgtgcaagtgagaagaaaaccagacggaaattt
gggggtgttgatagtgacaatgattctgacgatgacacattcagctccaagggtaaaaac
ttcaagtcaaagaaactcggatcaaaaccaactcccaaaagtcttagaacgaaacgctaa

DBGET integrated database retrieval system