Vitis vinifera (wine grape): 100250210
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Entry
100250210 CDS
T01084
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
100250210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100250210
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
100250210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
100250210
NCBI-ProteinID:
XP_002264071
UniProt:
F6I6E6
A0ABY9DDN2
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Position
15:join(20630048..20630239,20631028..20632788)
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AA seq
650 aa
AA seq
DB search
MEEESGGGPRVVAISLIEKATNSTASEVDPRLLKSIKSVVRSSDSELRIAAQTLMDLMKR
DHAQVRYLALLIIDELFMRSKLFRTLLVVNLDQLLSLSVGFRRNQPLPAPAAVASILRSK
AIEFLEKWNTSFGIHYRQLRLGFDYLKNTLRFQFPNLQANAARIQQERKEREMRSKEILL
KKFETLKEKFSSIKEEIQLTMDEIRECLDIVRPKDESVPLDFIEDDEMEEFCSSELRQIR
LDSLKEAEKVHENSDNKVVFDALRELYKLLVTRHLVSAQEWISVLIRVEVADNRSRDSML
KEFIDIRNHIQSVKKKCEESGCVLANTMNDEEEDFWEEGKIELSESDSFTAANKQSKDLA
KASTSSKAKSEAPECSNKESNGNKRSGRESIESDSTSLRSKLLAEAPLMNWGSFLDNWGS
KQDVLANQRGLELEGHWGRVDYDAVIPAEKIAELNIQTTVYKEERVDIQPCRAPLSKGGL
CQRQDLRVCPFHGPIIPRDDEGKPIHENSSTEEITLDLGSDLVEQLAKQAVKNVRDRDKE
ETKKREYDKQALKRAKLAKVREHNEAVLREAAMASTSRSEAFGEDLGATNMDKPLARNKK
QTLASMLRKKITTKDRLGQKLLNTRVRDETMRQLTLGEDANYREAFPNQW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagagcggaggagggccgagggtggtggcgatttcgctgatagagaaggcg
acgaactccacggcgtcggaggttgacccgcgccttctcaaatccatcaaatcggtggta
cgatcttccgattcggagctccgaatcgccgcccaaaccttaatggacctcatgaagcga
gaccatgctcaggtgcggtaccttgcacttctcataattgatgaactgttcatgcgatca
aagcttttcagaaccctccttgttgtgaacttggatcaattattgagtttaagtgtcgga
tttagaagaaatcaaccactccctgctcctgctgctgttgcatctattttgcgttcaaag
gcaattgaattcttagagaagtggaacacttcatttgggattcattacagacagctcaga
ttagggtttgactacttgaaaaacactcttagatttcaatttcctaatctacaagcaaat
gctgcccggattcaacaagagagaaaggaaagggagatgaggtcaaaagagattttactg
aagaagtttgaaacactgaaagaaaagttttcttctattaaagaggaaattcagttaaca
atggatgagataagggaatgtttagacattgtacgtcctaaagatgaaagtgtgcccctg
gatttcatagaggatgatgaaatggaagagttctgtagttctgaattgcggcagatccgt
cttgattcattgaaagaagcagaaaaagttcatgagaatagtgataataaagtggttttt
gatgcattgagggagctgtacaagctcctagtgacaaggcatttggtttcagcacaagaa
tggatctctgttcttataagggttgaagtggcagataacagatccagagactcgatgctg
aaggagttcattgatatccggaatcatatccagtcagtgaagaagaaatgtgaagaatca
ggctgtgttcttgctaatactatgaatgatgaggaagaggatttttgggaggagggtaag
atagaactatctgagagtgatagttttactgcagcaaacaagcaaagtaaagatcttgcc
aaggcatcaacttccagcaaagcaaaaagtgaagctcctgaatgtagtaataaagagtct
aatggcaataagaggtcaggtcgggaaagcattgaaagtgattcaacctccctgagaagt
aagcttttggctgaagctccattaatgaattggggctccttcttggataactggggttca
aagcaagatgttttggctaaccagagaggattggagcttgaaggccactggggtagggta
gattatgatgcagttattccagcagaaaaaattgcagagttgaacattcagacaactgtt
tacaaggaagaacgtgtcgatatccaaccatgccgtgctccattgagcaaaggcgggctt
tgtcagagacaagatttgagagtttgcccttttcatgggcccataatacctcgagatgat
gaaggaaaaccaatccatgagaactcttcaacagaagagataactcttgatttagggtct
gatttagtagagcaattagcaaagcaggctgtgaagaatgttcgagatagagataaagaa
gaaacaaagaagagagaatatgataaacaagcattgaagcgtgcaaagcttgcaaaagtc
cgagaacacaatgaagcagtcttacgagaagctgcaatggcatcaacttcaagatcggag
gcttttggtgaggatttgggggctaccaatatggataaacccttggccagaaataagaag
caaactctagcctccatgttgcgcaagaaaataacaacaaaagatcggttaggtcaaaaa
cttttgaacacccgggtaagggatgaaactatgagacagctaacgctgggtgaggatgca
aactacagagaagccttcccaaatcagtggtag
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