KEGG T01084: 100250852

Vitis vinifera (wine grape): 100250852

Entry

100250852         CDS       T01084

Name

(RefSeq) DEAD-box ATP-dependent RNA helicase 15

K12812

ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03013

Nucleocytoplasmic transport

vvi03015

mRNA surveillance pathway

vvi03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100250852
  09122 Translation
   03013 Nucleocytoplasmic transport
    100250852
   03015 mRNA surveillance pathway
    100250852
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100250852
   03041 Spliceosome [BR:vvi03041]
    100250852
Enzymes [BR:vvi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100250852
Messenger RNA biogenesis [BR:vvi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100250852
Spliceosome [BR:vvi03041]
Complex C
  Other components
   EJC/TREX
    100250852
Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100250852

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 YihI

Other DBs

NCBI-GeneID:

100250852

NCBI-ProteinID:

XP_002285072

UniProt:

A0ABY9BQL1

LinkDB

Position

4:complement(join(4804238..4804248,4806569..4806632,4806717..4806800,4806906..4807050,4808843..4809027,4809109..4809165,4809766..4809884,4810014..4810245,4810370..4810542,4812573..4812673,4813629..4813744))

AA seq 428 aa
MGETRDNDAYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS

NT seq 1287 nt +upstreamnt +downstreamnt
atgggagaaacaagggacaacgatgcttacgaggaagagcttctcgactacgaggaagaa
gaagacaaagcccccgactccgtcaccggaaaagtcaacggcgaagccgccaagaagggc
tatgttggaattcacagttcaggattcagagacttccttttgaagccagaacttcttcgg
gcaattgtggactcggggtttgagcatccttctgaagtgcaacatgagtgtatccctcaa
gctatcttgggcatggatgttatttgtcaagctaaatcggggatgggaaaaactgctgtg
tttgttctgtcaaccctgcaacaaattgagcctgtcacaggtcaagtcgcagctctcgtt
ctatgccatacaagggagttagcttaccagatctgccacgagttcgagagattcagtact
tatttacctgatatcaaggttgctgttttctatggtggcgtcaatataaaaattcacaag
gatcttttaaaaaatgaatgccctcatattgttgttggaacacctggaaggatactggca
cttgctagagacaaggaccttgctttaaagaatgtgagacactttatccttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagggatgttcaagagatcttcaagatgact
cctcatgataagcaggttatgatgttttcagcaaccctcagcaaggaaatccgccctgtt
tgcaagaaatttatgcaagatcctatggaaatttatgttgatgacgaggccaagttgacc
cttcatggtcttgtacagcactacatcaaactgagtgagcttgagaaaaatcgcaagttg
aatgatctccttgatgcattggacttcaatcaagttgttatcttcgtcaaaagtgtgagt
agagccgcagagctgaacaagttacttgtggagtgcaatttcccgtctatctgcatccat
tctgggatgccccaggaagaaaggttgacacgctacaagggtttcaaggaggggcataaa
aggattcttgtggccacggatttggttggtaggggaattgacattgagcgtgtcaatatt
gttataaactatgacatgccagattctgcagacacttatctgcacagggttggtagagct
ggaagatttggcaccaaaggacttgcaattacatttgtttcatcagcttctgactctgat
gttcttaatcaggtccaggagagatttgaggtggatattaaggagctccctgagcagatt
gatacctctacatacatgccatcgtaa

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