Vitis vinifera (wine grape): 100250857
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Entry
100250857 CDS
T01084
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100250857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100250857
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100250857
mRNA degradation factors
5'-3' decay
Lsm complex
100250857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
100250857
NCBI-ProteinID:
XP_003633086
UniProt:
D7TCC6
LinkDB
All DBs
Position
11:complement(join(720843..720920,721537..721599,721699..721814,722040..722108,722988..723048))
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AA seq
128 aa
AA seq
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MSWAGPEDLLFSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDI
YCDIPLGLYVIRGENVVLLGELDLDKEELPPHMTRVPEAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggcccagaagatcttctcttttccacttcccttgcaagctatcttgat
aaaaaacttcttgtcttgttacgagatggccgaaagctcttgggtgtacttcgttctttc
gatcaatttgcaaatgctgttcttgaaggtgcttgtgagcgagctattgttggggatatc
tactgtgacattcccctaggcctatatgttatccgcggggagaatgttgtcttacttggt
gaactggatttggataaggaggagcttcctccgcatatgacccgtgtgcctgaagcagag
ataaaaagggctcagaaagctgaaagggaagctacagatttgaagggctccatgagaaag
agaatggagttccttgattttgactaa
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