Vitis vinifera (wine grape): 100251089
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Entry
100251089 CDS
T01084
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100251089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100251089
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100251089
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100251089
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100251089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
100251089
NCBI-ProteinID:
XP_010654041
LinkDB
All DBs
Position
8:complement(join(19048601..19048615,19049028..19050986,19051666..19052106,19052185..19052304,19053525..19053785,19054091..19054192,19056498..19056860))
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AA seq
1086 aa
AA seq
DB search
MEMESSRRSFDRSREPGFKKPRLAEEAERGPNPNGRPFPQRPGAAPAASRLKTNERDVDR
DDLGRGLYQQQHQELVTQYKTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCTNIL
EVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSIHPGMRHLFGTWK
GVFPLAPLQMIEKELGFPPAINGSSPGIATSRSDSQSQRPPHSIHVNPKYLEARQRLQQS
SRTKGAANDVTGTMVNSTEDADRLDRTAGINAGRPWDDLPAKSIQHSHREAIGELVEKKI
GAPYGDYEYGTDLSRNPGLGIGRPSEQGHDKPWYKAGGRVVETFSSQRNGFDIKHGFPNY
PAPRSANADAHLQPTQSTVNRSNSGMSRSWKNSEEEEYMWDDMNSKMTEHSAANHSKKDR
WTPDDSEKLDFENQLQKPQSIYDVGSSVDRETSTDSMSSEQREQGAFGHRMSSLWPLQEP
HSTDGLKHSGTSTLILGHSEGYPTVSGLSTSASSSLARTGLRPLMGSSHAGASGFGFLTN
ASSGSTTGTVGQQRLQSVGAASPSGQSPMHQPDHLPVHSLPLPDIKASQFSGQFNIGSHK
QFTLDALPKLIQKAQLGDLQKLLPHNLQSLSPAVPSVPIRHHAPFSPQLQPDPLQPEPSG
QAQKTSLPQTSIFEAPSTIENPVLEHSNYPAAESTGKLSTSNLLAAVMKSGILSNSSVSG
SIPKTSFQDTGAVLQSVIQPPLPSGPPPAQFTSSGPRVATASLSGPSHDSKSASNLSQRK
VERPPLPPGPPPPSSLAGSGLPQSSNVTSNASNPIANLLSSLVAKGLISASKTESSTHVP
TQMPARLQNQSAGISTISPIPVSSVSVASSVPLSSTMDAVSHTEPAAKASVAVTQSTSVE
VKNLIGFEFKSDIIRESHPSVISELFDDLPHQCSICGLRLKLRERLDRHLEWHALKKSEP
NGLNRASRSWFVNSGEWIAEVAGFPTEAKSTSPAGESGKPLETSEQMVPADENQCVCVLC
GEVFEDFYSQEMDKWMFRGAVKMTVPSQGGELGTKNQGPIVHADCITESSVHDLGLACDI
KVEKDP
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaaagttctcgtagatcctttgatagatcgagagagccgggcttcaagaaa
cctcgattggccgaagaagccgagcgcggtccgaaccctaacggccggccgtttcctcaa
cgacccggagcggctccggcggcgtcgaggcttaaaactaatgaaagagatgtagacagg
gatgatttgggtcgcggactttatcagcagcagcatcaagagcttgtgactcagtacaag
actgcactcgcggagctgacattcaattcaaaaccgatcattaccaatttgacgataatt
gcaggggagaacctacatgctgccaaggccatagctgcaactgtctgcactaacattctc
gaggttcctagtgagcaaaagctgccatctctctatcttttagatagcattgtgaagaat
attggaagagattatatcaaatattttgctgccagactgcctgaggtattctgcaaggca
tatagacaagttgatccttctatacatcctggtatgcggcatctttttggaacgtggaaa
ggagtgttccctcttgcaccacttcagatgatcgagaaagaacttggcttccctccagcc
atcaatgggtcatctccaggaattgcaacatctaggtctgattctcagtcacaacggcca
ccacacagtattcatgtaaatccaaagtatttagaggcacggcaacgtcttcagcagtcg
agcaggacaaaaggagcagccaatgatgttactgggaccatggtcaactccactgaggat
gcggataggttagacagaacagccggtatcaatgctggaaggccatgggatgatcttccg
gctaagagcatccagcattctcacagagaagcaataggtgagctggtcgagaagaaaatt
ggtgcaccatatggagattatgaatatggtactgatctttcaaggaatcctggcttggga
attggtagacccagcgagcaaggacatgacaaaccttggtataaagctggtggtagggtt
gtggagacattttccagccaaagaaatggttttgatatcaagcatggatttccaaattac
ccagcacccagatctgcaaatgctgatgcacatctacagcctacacagagtactgtaaat
agaagcaattctgggatgtctaggagctggaagaactctgaggaagaggaatacatgtgg
gacgacatgaactctaaaatgacagagcatagtgcagccaatcactcaaagaaagatcgt
tggactcctgatgattccgagaaattggattttgaaaaccagcttcagaaaccacaaagc
atatatgatgttgggtcaagtgttgacagagaaacttccactgattcaatgtcctcagaa
cagagagaacagggagcttttgggcacaggatgtcatcactgtggccattacaggagcca
cattctacagatggactgaaacattcaggcaccagtacacttattttaggtcattcagaa
ggctaccctactgtcagtgggttgtcaacaagtgcaagttcttctctggcgaggacaggc
cttagaccactgatggggtcatctcatgctggagcatcaggttttgggtttttgacaaat
gctagttcagggtctactactggcactgttggacaacaacggcttcagtctgtaggagct
gcatcaccatctggacagtcaccaatgcaccagccagaccatctaccagttcattctttg
ccgctccctgatataaaagcctctcaattttcaggacagttcaacatagggtctcataag
caatttactcttgacgctttgcctaaactaattcagaaggcgcagctaggtgacttgcaa
aaattgcttccccataatttgcagagtttatctcctgcagtgccatctgttccaataagg
caccatgctcccttttcaccacagctacagccagaccccttgcagcctgaaccttctggt
caagcgcagaaaacatcactacctcaaacctcaatctttgaagctccctcaacaatagag
aatcctgtgttagagcattcaaattatcctgctgcagaaagtacaggaaagttgagcaca
agtaatttgttggccgcagttatgaagagtgggatactatctaacagttctgtttctggt
agcattcctaaaacgagttttcaggatacaggggcagtgctacagtctgttattcagcct
cctttaccgagcggacctcctcctgcccagttcacatcctcaggacctagggttgcaaca
gcatctctatcaggtccctcccatgatagcaaatccgcctcaaatctttctcagagaaag
gtagagcggccgccattgccacctggtcccccaccgccttcttctcttgcaggcagtgga
ttaccacaatcttcaaatgttacgagtaatgcatcaaaccccattgctaatctcttaagc
tccttagttgctaagggcttgatatctgcatcaaaaacagagtcatcaactcatgtgcca
actcagatgcctgctcggcttcagaaccagagtgcaggcatttctaccattagtcccata
ccagtttcctcagtttcagttgcatcttctgttcctctttcatctactatggatgcggtt
tctcacactgagcctgctgctaaagcctctgttgctgtaacacaatccacctcagtggag
gtaaaaaacctcataggatttgagtttaagtcagatataattcgggagtcacatccatca
gttataagtgaactctttgatgaccttccacatcagtgcagcatatgtggccttcggctt
aaacttagagaacgacttgatagacatttggagtggcatgctttgaaaaagtctgagcca
aatggtctaaatagagcatcaaggagttggtttgtaaactcaggtgaatggatagccgaa
gttgcaggatttccaactgaagctaagtccactagtccggcaggagagtctgggaaacct
ttggagacgagtgagcagatggttcctgcagatgaaaatcagtgtgtatgtgttttgtgt
ggtgaagtgtttgaagatttttatagtcaagaaatggataaatggatgttcagaggagct
gtgaagatgactgttccgtcccaaggtggtgagctaggaactaaaaatcagggtcctatc
gtgcatgctgattgtataacagaaagttctgttcatgatttgggactggcttgtgatatt
aaagtggaaaaagatccataa
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integrated database retrieval system
