KEGG   Vitis vinifera (wine grape): 100251493
Entry
100251493         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100251493
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100251493
   03012 Translation factors [BR:vvi03012]
    100251493
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100251493
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100251493
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100251493
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 nSTAND3 ATPase AAA_16 HJURP_C T2SSE AAA_19 PhoH
Other DBs
NCBI-GeneID: 100251493
NCBI-ProteinID: XP_002269787
LinkDB
Position
18:complement(join(25728017..25728487,25734161..25734271,25734405..25734557,25740037..25740096,25740191..25740499,25749396..25749544,25749660..25749729,25756317..25756520,25757057..25757251,25766232..25766504,25773603..25773773,25774477..25774607,25774718..25774877,25775019..25775207,25779035..25779130,25801644..25801880,25801984..25802071,25802166..25802320,25803304..25803492))
AA seq 1136 aa
MHSRLAFLLLSSPFKPRLSRPPTFSFLSSLPTPSSFIRRRGLCGYAAEQFSDDEYDCDFE
SHKASSSVANIDEWKWKLSLLSRNEQDQEIVSRDKKDRRDYEQISNLANRMGLYSEIYGK
VMVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMLLSSGKVSDCSDDA
NGNGGFEDVNPEDNPDSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEGKKMLDFRKSLPA
FREKERLLQAIARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISA
MSVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVF
VDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFGGAPTIHIPGFTYP
VRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLVPRKRKNKITALVEDALTKSSF
ENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQIRAH
PLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVVFVVDCG
KAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPSCVYEAFSEYQLPE
LLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKMIGALDEKENLTNLG
EYLSMLPVDPKLGKMLIMGTIFRCFDPILTIVAGLSVKDPFLLPQDKKDLAGTAKSRFSA
KDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLLD
ADANTNNRLSHNQSLVRAIICSGLFPGIASVVPRETSMSFKTMDDGQVLLYANSVNARYQ
TIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGTLSRGAMAEHLKMLEGYIDFFMDP
SLAECYWKLKEEFDKLLQKKLQNPSLDIHKEGKYLMLGIQELVSGDQCEGRFVFGRESKK
PREPCDSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKP
KKNKQLAERDAAIEALAWLTHTSDNSQGEYGEDESPPDVTNNMLKILGKRRRSKRR
NT seq 3411 nt   +upstreamnt  +downstreamnt
atgcattcgaggctagcatttctcttgctttcctccccattcaaaccaaggctttcacgc
ccgcctactttttctttcctctcttctctccccactccttcttccttcattcgccgccgg
ggactttgcggatacgccgccgagcagttctccgatgatgagtacgactgcgattttgag
agccataaggcatcatcctcagtggcgaacattgatgagtggaaatggaaactcagcctg
ctatcacgcaatgaacaagatcaagagattgtgtccagagataaaaaagataggagagac
tatgagcagatttctaatctcgccaacaggatgggtctttacagtgaaatatatggaaaa
gtgatggttgtgagcaaggttccactacccaactacagaccagatcttgatgataaacgg
ccacagagggaggtagttatcccactaagcttgcagaggagagtagagggtctacttcag
gaacatcttgatagaatgctgttgagttctggaaaggtcagcgactgttctgatgatgcc
aatggcaatggtgggtttgaagatgtgaatcctgaagataatccagactctctcctagat
gggtctgttatggaaaaggttcttcagaggaggagtttgcgaatgcgtaatatgcagagg
gcttggcaggagtcacctgaaggtaagaagatgctggactttaggaaatctctccctgca
tttagagagaaggaaaggttgctccaggcaattgcacgaaaccaggttgttgtggtttct
ggggagactggatgtggtaagacgactcaacttcctcaatacatattggagtcggaaatt
gaatctggtcgtggagcattctgtagcataatttgtactcagcctcgaagaatatctgct
atgtctgtttctgaaagggtgtctacagagagaggagagcctctgggtgaatcagttggc
tataaagttcgattggagggaatgaaaggaaaaaatacccatctacttttctgtaccagt
ggtattttgcttcgaaggttgttgagtgaccgcaacctgaatggtataacccatgttttt
gttgatgaaattcatgagcgaggcatgaatgaagatttcctattgattgtgttgaaggac
cttctcccacgtcgtcgggatttgagattgattttaatgagtgctactcttaatgctgag
ctcttttccaatttttttggtggagcaccaacaattcacattccgggctttacatatcca
gtgagagcccactttctggaagatgtgttagaaatgacaggatataagttgacttcattc
aaccaaattgatgattatggccaagagaaaatgtggaagactcagaagcagctagtacca
aggaaaaggaaaaacaagatcactgctcttgttgaggatgctcttactaagtcaagcttt
gagaattatagctctggagtacgtgattcgctgtcatgttggacgcctgattgcatggga
tttaatcttattgaggcagttttatgccacatatgtcggaaagaacggccaggtgctgtg
ttagtattcatgacaggttgggaggacattagttgtttgagggatcaaattagagctcat
cccctcctaggggatcctaatagagttctgctgcttacgtgccatggttcaatggcaact
tctgaacagaaactcatatttgagaagccgcctcctaatgtacgtaagatagttcttgca
acaaatatggcagaagcaagcattacaatcaatgatgtagtttttgttgttgactgtggg
aaagcaaaagaaaccacctatgatgccttgaataataccccttgtctactgccatcttgg
atatcacaagcttctgcccgacaaagaagaggtagggctggtcgtgtgcagccaggggaa
tgttaccacctatacccctcatgtgtttatgaagctttttctgaatatcaacttcctgaa
ctgctgagaactcctttgaattctctatgcttgcaaataaaaagtcttcaggttgggagt
attggagaattcttatcagctgcactgcagccaccagaaccattggctgtccaaaatgct
gttgattttctgaagatgattggagctttggatgagaaggaaaatcttacaaatcttggt
gagtatttatcaatgctcccagtggatcccaagcttgggaaaatgctaatcatgggcact
atcttccgttgctttgatcctattctaacaattgtggctggacttagtgtcaaggatcct
ttccttttgcctcaagacaagaaggatttggcagggacagcaaaatctagattctctgca
aaagactatagtgaccacatggctcttgttcgtgcatatgaaggatggaaagacgcagaa
agagaaggatcagcatatgagtattgctggaggaatttcctctctgcccagactcttcag
gctatccattctcttcggaaacagtttagcttcattctaaaagatgctggcttactagat
gcagatgcaaacaccaataatagattaagtcataaccaatcattggttcgtgcaatcata
tgctctggtctcttccctggcatagcatctgttgtgccaagggaaacgtcaatgtctttc
aaaacaatggatgacggccaagttttactatatgcaaattctgtgaatgcacgttaccag
acaattccctacccttggcttgtctttggtgaaaaagtgaaggtcaatacagtttttata
cgggattctactgggatatctgattcaatactgatcctttttggtggtactctgagccgt
ggagcaatggctgagcatttgaaaatgttggagggttacattgatttcttcatggatcct
agtttggcagagtgctattggaagcttaaagaggaatttgataagcttttacaaaagaaa
cttcaaaatcctagcttggacatccacaaggaaggaaagtaccttatgcttggcattcag
gagctggtatcaggagatcaatgtgaagggagatttgtatttgggcgtgaaagcaagaaa
ccaagggagccttgtgacagcaacagatttacaaaagatggaacaaacccaaagagctta
ctacaaactcttctgatgcgagcagggcattcccctccaaaatacaaaacaaagcacctc
aaaacaaatgaattcagggcactggtggagttcaagggaatgcagtttgtggggaagccc
aagaaaaacaagcagctcgcagagagggatgcagccatagaggcattggcctggttgact
cacacatctgacaacagtcagggtgaatatggcgaagatgagtcccctcccgatgtcact
aacaacatgctaaaaattcttggaaagcgcagaagatcaaagcgtagatga

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