Vitis vinifera (wine grape): 100251721
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Entry
100251721 CDS
T01084
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100251721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100251721
03036 Chromosome and associated proteins [BR:
vvi03036
]
100251721
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100251721
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100251721
mRNA degradation factors
5'-3' decay
Decapping complex
100251721
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100251721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
100251721
NCBI-ProteinID:
XP_002270379
UniProt:
A5C9D5
LinkDB
All DBs
Position
15:complement(join(23031180..23031258,23031341..23031414,23031492..23031580,23031729..23031909,23032022..23032273,23033338..23033576,23034253..23034487,23035000..23035060,23046774..23047039))
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AA seq
491 aa
AA seq
DB search
MHARGRYPPGIHGGGRGGGMGTGNPSGPNPNFQYRNPNQQQYVQRNVGQSYQQFQQQNQQ
QWLRRNQAGADSAVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQILLFSATF
PVTVKDFKDRYLQKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQAIYCR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcgcgaggaaggtacccacccggcatacacggtggtggccgtggcggcggaatg
gggaccggaaaccctagcggccccaatcctaattttcagtatcggaaccctaaccagcaa
cagtacgttcaaaggaatgtagggcagagttaccagcagtttcagcagcagaatcagcag
cagtggttgaggaggaatcaggcaggggctgattcggctgtggatgaagtggagaagact
gtgcagtcggaggccgtcgattcgagttcacaagattggaaggcacggctaaagatacca
ccacctgatacacgctacaggacagaggatgtaacggccactaagggaaatgaatttgag
gattattttctgaaacgtgagctgcttatgggcatatatgagaagggatttgaaagacca
tctcccattcaggaagagagtattccaattgctctaactggaagcgatattcttgctaga
gctaaaaatggaactggaaaaacagcagcattttgcattcctgccttggaaaaaattgat
caagataacaatgtgattcaagttgttatacttgttccaacacgagaattggctcttcaa
acatcacaagtgtgtaaggagcttgggaaacatctgaaaatccaagtgatggttaccact
ggtggcaccagcttaaaagatgatatcatgcgtttatatcaaccagttcatttgcttgta
ggaactcctggaagaatactagatctttcgaagaagggtgtgtgcattttgaaagattgt
tccatgcttgttatggacgaggctgataagcttttgtcgccagagtttcaaccttcgata
gagcaactgattcattttatgcccttgaatcgtcaaattttgcttttttcagctaccttt
ccagttactgttaaggattttaaagatagatatctccaaaaaccttatattattaacctt
atggatgagctcactctcaagggtattactcaatattatgcttttgtcgaagaaagacag
aaagttcactgcctaaatactcttttctctaagcttcaaatcaaccaatccatcattttc
tgcaactcggtgaatcgagtggaactgttggccaagaagattacagaacttggctattct
tgcttctatatccatgcaaagatgctgcaagatcatcgcaatagagtatttcatgacttc
cgtaatggagcgtgcagaaatcttgtctgtactgatctctttacacgagggatagatatc
caagccgtcaatgttgttattaattttgattttcctaagaactcagaaacatatctgcac
agagttggtcgatcaggaaggtttgggcaccttggattggctgtgaatttgatcacctat
gaggaccggtttaacttgtataggattgagcaagaacttgggactgaaataaagcaaatt
ccaccgcatatagatcaggctatttactgtcggtga
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