Vitis vinifera (wine grape): 100252009
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Entry
100252009 CDS
T01084
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100252009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vvi04121
]
100252009
Enzymes [BR:
vvi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100252009
Ubiquitin system [BR:
vvi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
100252009
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
100252009
NCBI-ProteinID:
XP_002277712
UniProt:
F6H779
LinkDB
All DBs
Position
16:complement(join(27475554..27475916,27476500..27476886,27478791..27479024))
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AA seq
327 aa
AA seq
DB search
MDLDNIECVSSSDGMEEEEIHHLHHHHHNLNHNHVVHQFSSKPLQNGVVPPATAPATSVH
ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLE
LPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVD
MHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGD
ENEARNYGYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKE
LKLRVTGRIWKEQQNQDAGVCIPNLCS
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggacttggataatatcgagtgtgtatcgtcatcggatggcatggaagaggaggagatc
caccaccttcatcaccatcatcacaatctcaatcacaatcatgtggttcatcagttctcg
tcgaagcctcttcaaaacggcgtcgttcctccggcgactgctccggcgaccagcgttcat
gaattgcttgagtgccccgtgtgcaccaattccatgtacccaccaatccaccagtgccac
aacggacacaccctgtgctctacctgtaaaacaagggttcacaataggtgccctacttgt
agacaggagcttggagatattaggtgcttagcactggagaaggtggctgaatctcttgaa
ttgccttgcaagtattactccttgggctgcccggagatatttccttattacagcaaactc
aagcatgaggcagtatgcaacttcagaccatacaattgcccatatgctggatccgagtgc
tctgttgttggggacattcctttcttagtttcccatctcagggatgatcacaaggtggac
atgcacactggatgtacatttaaccatcgatatgtaaaatccaatccccgtgaagtagaa
aatgctacctggatgctaacagtcttccattgttttggtcaatatttttgccttcacttc
gaagcctttcaactcggcatgtcccctgtatatatggcattccttcgtttcatgggtgat
gagaatgaagcacggaactatggttacagcctggaggttggtgcaaatggaaggaaactc
atatgggagggtactccaaggagcatccgggatagccatagaaaggtcagggacagccat
gatggtctcattatccaaagaaacatggcacttttcttctccggtggggacagaaaggag
ctgaagctgagagttacaggaaggatatggaaggaacagcagaatcaagatgctggtgtg
tgcatacccaacctctgtagctaa
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