KEGG   Vitis vinifera (wine grape): 100252028
Entry
100252028         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100252028
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100252028
   03012 Translation factors [BR:vvi03012]
    100252028
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100252028
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100252028
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100252028
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22
Other DBs
NCBI-GeneID: 100252028
NCBI-ProteinID: XP_002264021
UniProt: F6I3K9
LinkDB
Position
8:join(5979733..5979999,5980576..5980721,5993781..5993880,5994005..5994220,5994364..5994459,6003395..6003670,6003985..6004188,6004293..6004448,6006127..6006219,6027934..6028148,6028243..6028402,6028559..6028832,6028907..6029099,6029213..6029399,6029619..6029987,6030148..6030273)
AA seq 1025 aa
MSLRCLSVNCSFFSKHLSSSPKEFALLFRISISTMSYRPNYQGGRRGAGGRGGGGRRGGG
RGGGGGGRGEQRWWDPVWRAERLRQQAAEVEVLNEDEWWGTMEQMKRGGEQEMVIKRTYS
RGDHQILSDMAYQLGLYFHAYNKGKTLVVSKVPLPNYRADLDERHGSTQKEIRMSTETEI
RVGNLLDSSQEVVTVGGPSAVSSQGVKPSSSGASITSAVSKLEIDTAKEGLSVELKQNHE
KMKGSNSVKMMQAFREKLPAFKMKSEFLKAVADNQVLVVSGETSCGKTTQLPQFILEEEI
SSLRGADCNIICTQPRRISAISVAARISSEKGESLGETVGYQIRLEAKRSAQTRLLFCTT
GVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILHDLLPRRPDLRLILMSATINAD
LFSKYFGNAPTIHIPGFTFPVAELFLEDLLEKTRYNIKSEFDNFHGNPKWRKRQQDSKKD
PLMELFEDTDIDLHYKNYSPYTRRSLEAWSGSQLDLGLVEATIEHICRHEGEGAILVFLT
GWDDISNLLDKVKGNNFLGDPRKNLVLPLHGSMPTINQREIFDRPPSNMRKIVLATNIAE
SSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLY
PKMIHEAMLQFQLPEILRTPLQELCLNIKSLQLGKIGSFLSKALQPPDPLSVQNAVELLK
TIGALDDMEELTPLGRHLCKLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFVLPI
NRKEEANAAKRSFAGDSCSDHIALLNAFEGWKDAKCSGKERDFCWENFLSPITLQMMDDM
RNQFLDLLSDIGFVDKSKGAIAYNQYSNDLEMVCAILCAGLYPNVLQCKRRGKRTAFYTK
EVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTASIFVRDSTNISDYSLLLFGGNLIPSET
GEGIEMLGGYLHFSASKSVLELIRKLRSELDKLLKRKIEEPGLDISAEGKGVVAAVVELL
HSQNV
NT seq 3078 nt   +upstreamnt  +downstreamnt
atgtctcttcgttgtctcagtgtcaactgcagtttcttctccaagcatctctcttcatcg
ccgaaagagttcgcattactgttccggatctcgatttccaccatgtcgtataggccgaac
taccagggcggccgccgtggcgctggcggtcgcggaggcggtggccgtcgtggcggtggt
cgtggtggcggcggcggagggcgcggcgagcagcgatggtgggatcctgtgtggcgagcg
gagcggttgaggcagcaagcggctgaggtagaagtgctcaacgaggatgaatggtggggt
acaatggagcaaatgaaaagaggtggagagcaggagatggtaatcaagcggacttacagt
cgaggagaccaccaaatcctctctgatatggcttatcagttgggactttatttccatgca
tataacaaggggaagacacttgttgtcagcaaagttccattgccaaattaccgggctgat
cttgatgaacgccatggatccacacaaaaagagatacgaatgtctacagaaacagaaata
agagttggtaatctgttggatagctcgcaggaggtggttaccgttggtggtccttctgct
gtgtcctcacagggggttaaaccatcatcatctggtgcaagtattacatcagcggtgtca
aagttggagattgataccgcgaaggagggtcttagtgttgaactgaagcaaaaccacgaa
aagatgaagggaagtaatagtgtgaagatgatgcaggcatttagagaaaagcttcctgca
ttcaaaatgaaatctgagtttctgaaagctgttgcagataaccaggtactggtagtttca
ggggagacaagttgtggtaaaacgacacagctccctcagtttatcctagaggaggagata
tcatctcttcgaggtgctgattgtaacataatttgcactcagccccgtcgtatatctgcc
atatctgttgcggctcgaatttcctctgaaaagggtgagtctcttggtgaaactgttggt
taccagattcgcctggaagcaaagcgctctgctcaaacacgtttgctattttgcaccact
ggagtactacttcggcagctggttcaggacccagatctaactggtgtaagccatttgcta
gtggatgaaattcatgaaagaggcatgaatgaggacttccttttaataattttgcatgac
cttcttcctcggcgaccagatctgcgtcttattctaatgagtgctaccattaatgctgac
ttgttctccaaatactttggaaatgccccaactatccatataccgggatttactttcccc
gtggcagagttgtttctggaagatctattggagaaaactcgttataatatcaagtcagag
tttgacaactttcacggaaacccaaagtggaggaagagacaacaggattctaaaaaagat
cctttaatggaattatttgaggacactgacattgatttgcactacaaaaactacagccct
tatacaagacgttctcttgaagcttggtctggttcacagcttgatttgggtcttgttgaa
gcaacaattgaacatatttgtcgccatgaaggggaaggagcaattcttgtattcctcact
ggctgggatgacatttctaatctacttgacaaagttaaaggaaacaattttcttggtgat
cccagaaagaatttagtccttccactgcacggttcaatgcctactatcaatcaacgggaa
atatttgatcgaccaccctccaacatgaggaaaattgtgctagccacaaacattgcagag
agtagtatcaccatagatgatgttgtatacgtcatagactgtggaaaggcaaaggaaaca
agttacgatgctctaaacaagttggcttgcctgttaccatcatggatttccaaggcttca
gctcatcagagacgaggacgagcgggccgtgtgcagcctggagtttgttatagactttat
ccaaagatgatacatgaggcaatgctccagtttcagttacctgaaattctccggacacct
ttgcaagagctatgcctgaatatcaaaagtttgcagcttggaaaaattggttcttttctg
tctaaggcgcttcagcccccagatcctctatctgttcaaaatgcagttgaacttcttaaa
acaattggcgctctagatgatatggaggagcttactccacttggccgccatctctgcaaa
ttacctttggatccaaatattggaaagatgctcctcatggggtccatctttcagtgcctt
aaccctgcattaacaattgcagctgctcttgcacatcgtgacccatttgtccttccaata
aataggaaagaagaagctaatgctgcaaaaagatcctttgctggcgattcttgcagtgat
cacatagcacttctcaatgcatttgaaggatggaaagatgcaaaatgcagtgggaaggaa
agggacttctgttgggaaaatttcttatcaccaataaccttgcagatgatggatgatatg
agaaatcaatttctagatctactgtcagacattggctttgtggacaaatccaagggtgct
attgcctataatcaatatagcaatgatctggagatggtatgtgcaatcctttgtgctggg
ctctacccaaatgttttgcagtgcaaaagaagaggaaagcgaacagcattttacactaaa
gaagttgggaaagttgacatccatccagcatctgttaatgctggtgttcatcttttccct
ttgccttacatggtttatagtgagaaggtcaaaactgccagcatctttgtacgggattca
acaaacatatctgattattctctacttctttttggcggcaatctcattccaagcgaaacc
ggtgagggaattgaaatgcttgggggttaccttcatttctctgcttcaaagagtgtatta
gagttgatacggaaattgcgcagtgagcttgacaagctgctaaagaggaagattgaggag
ccagggctggacatttcagcagagggaaagggagtggttgctgctgtggttgagttactg
catagtcaaaatgtatga

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