KEGG   Vitis vinifera (wine grape): 100252096
Entry
100252096         CDS       T01084                                 
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X2
  KO
K12830  splicing factor 3B subunit 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100252096
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100252096
   03041 Spliceosome [BR:vvi03041]
    100252096
   03036 Chromosome and associated proteins [BR:vvi03036]
    100252096
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     100252096
Spliceosome [BR:vvi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100252096
 Complex B
    100252096
 Complex C
   U2 SnRNP specific factors
    100252096
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     100252096
    TFTC complex
     100252096
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A
Other DBs
NCBI-GeneID: 100252096
NCBI-ProteinID: XP_010653852
LinkDB
Position
8:complement(join(22005216..22005416,22006199..22006316,22012920..22013059,22014348..22014424,22014823..22014964,22015135..22015290,22015391..22015706,22016103..22016413,22017743..22019765,22019910..22020070,22020219..22020306,22021031..22021114,22021268..22021347,22021502..22021636,22025262..22025423))
AA seq 1397 aa
MAVAEEECSSTKSRSASNNDSHYLAKCVLKGSVVLHVVHGRIRSPSFSDIVFGKETSLEL
VIIGEDGIVQSVCEQAVFGTIKDLAVLRWNERFHHQNLQMQGRDLLVVVSDSGKLSFLRF
CNEMHRFFPVTHVQLSSPGNLRNQLGQMLAIDSNGCFIATSAYEDRLAMFSISMATDSDI
IDKRIFYPPEIEGDSGVARSVHRTSISGTIWSMCFISKDLNQPSGGYNPVLAIILNRRGA
VLTELVLLEWIIIENAVRVISQYAEAGHVAHSIVEVPHSYGFAFLFRIGDALLMDLRDAH
NPCCVYKTSLNILPTSVEQNFAEESCRVHDGDEDGIFNVAASALLELKDYVAKGDDPMNV
DGDSGMVKSTSKHVCALSWEPGNEKNSRMIFCVDTGELFMIEISFDSDGPKVNLSDCLYR
GLSCKALLWFAGGFLAALVEMGDGMVLKLEQGRLVYRSPIQNIAPILDMSVVDCHDEEHD
QMFACCGVTPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKVIDSYHSFLVLSFVE
ETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVDDGLLVQIHKNGVKLCLPTTVAHPEGIP
LASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSVSAYQYEIYEMQHVRLQ
NEVSCISIPHKHFDKKPSTFLSNLVDNSSAAALLIGVNIGRIFVIGTHKPSVEILSFLPD
EGLRILASGAISLTNTLGTAVSGCVPQDARLVLVDRFYVLSGLRNGMLLRFELPAASMVF
SSELSSHSPSVSSCSVNDADTNLSNMMAPNSIGPQMCAINLSEETNINSPVNLQLIAIRR
IGITPVFLVPLSDSLEADIIALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMECPMG
ILFVAENSLHLVEMVHSKRLNVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDIC
CVDPLSGSVLSSFKLELGETGKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRL
IVLCLEHMQNSDSGSMTFCSKAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGV
RLEESEAWQLRLAYTATWPGMVLAICPYLDRYFLASAGNSFYVCGFPNDNPQRVRRFAVG
RTRFMIMSLTAHFTRIAVGDCRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCILMDVDTA
VVSDRKGSIAVLSCSNHLEDNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLPADDVLKG
CDGSNTIIDFSENSIMAGTLLGSIIMLIPISREEHELLEAVQARLAVHQLTAPILGNDHN
EFRSRENSVRKAGVSKILDGDMLAQFLELTSMQQEAVLALPLGSLETVTSSSKQTLLSPI
SVNRVVQLLERVHYALN
NT seq 4194 nt   +upstreamnt  +downstreamnt
atggcggttgctgaggaagaatgttcatctaccaagtctcgatcagcctctaacaatgac
tcccactatctagccaagtgcgttctcaaaggaagtgtcgttctccatgtcgttcacggc
cgcatccgctctccttccttcagcgacatcgttttcggcaaggagacatccctagagttg
gtaataattggtgaagatgggattgtacaatctgtttgtgagcaagctgtatttggcaca
attaaagatcttgctgttctacgctggaatgagaggttccaccatcaaaatctacagatg
caaggtagagatcttttggtcgttgtttctgattctgggaagctttcatttctcagattt
tgcaacgaaatgcacaggtttttcccagtgacacatgttcagctttccagtccaggaaac
ttgaggaaccagcttggacaaatgctggctattgattcgaacggctgttttattgccact
agtgcatatgaagatcgattggccatgttctccatttcaatggctaccgacagtgatatc
attgataagagaatattctatcctcctgaaatagaaggggactcaggcgtagctagaagt
gtccacagaaccagtatatctggtaccatatggagcatgtgctttatttcaaaagatctt
aatcaacccagtggtgggtacaaccctgtgctagcaattattctaaataggaggggggcg
gttttgactgagctggttttattggaatggattattattgaaaatgctgttcgtgttatt
tctcagtatgctgaagctggacatgtagctcatagcattgttgaagttcctcattcatat
ggatttgcctttctgttcaggattggtgatgctcttctgatggatcttagggatgctcac
aacccttgttgtgtctataagacaagcttaaatattttacccacttcagttgagcagaat
tttgctgaagagtcatgtcgagtacatgatggtgatgaagatggcatctttaatgttgct
gccagtgccttgctagagctgaaggattatgttgctaaaggtgatgatcctatgaatgta
gatggtgacagtggcatggtaaaatcaacctccaaacatgtctgtgcattgagttgggaa
ccaggaaatgaaaaaaattcgaggatgatattttgtgtagatacaggagaactttttatg
attgaaatttcttttgactctgatggccctaaagttaatctatctgattgtctttataga
ggtctatcctgcaaggcacttttgtggtttgcaggcggatttcttgctgcacttgtagag
atgggggatgggatggtcctgaaattggaacagggaaggctggtttacagaagtcctatt
caaaacattgctccaatcctggatatgtctgttgtagattgccatgatgaggaacatgat
caaatgtttgcctgctgtggagtgacaccagagggatcattaaggatcatacggagtggc
atcagtgtggaaaagctattgaggactgccccaatttatcaaggcataactggcacttgg
actgttaaaatgaaagttattgattcttatcattcttttcttgtgctgtcatttgttgaa
gagactagggtattatcagttggtttaagttttactgatgtgactgattcagttggattt
cagcctgatgtctctactttggcatgtggtgttgtggatgatggtttgctggtccagatc
cacaaaaatggggttaaactctgtttgcccacaacagttgcacatcctgaaggcattcca
ttggcttctccaatttgtacatcttggtttccagaaaatataagcatcagtctaggggca
gttggatataatttaattgttgtcgcaacttcgagtccatgcttcttatttattcttggg
gtcagatcagtatcagcatatcaatatgaaatatatgagatgcagcatgtgagattgcaa
aatgaagtatcctgcatttccatacctcataaacatttcgataaaaaaccgtccactttt
ctcagtaatttagttgataatagcagtgcagctgccctactgattggggtaaatattggt
cgaatctttgtcattggcactcataagccttcagtggagattttgtcattcctacctgat
gaaggccttagaattcttgcttctggggccatttcattaacaaatacattgggaactgct
gttagtggttgtgtccctcaggacgcaagacttgttctagttgatcgattttatgttctt
tcaggtttgagaaatggaatgcttcttcggtttgagttgcctgctgcctctatggtgttc
tcatcagaattatccagtcacagcccatctgtgagttcctgttcggtaaatgatgctgat
actaatttatcaaatatgatggcgccaaattctattggcccacaaatgtgtgctattaat
ttatcagaagagacaaatatcaacagtcctgttaatctgcaattaattgcgatccgtcgt
attggcattactcctgttttcctggttcctctgagtgattcgcttgaggctgatattatt
gctctcagtgataggccttggttattgcagagtgcgaggcacagcctctcatatacttcc
atctcatttcaaccttcaacccatgtaactcccgtatgttccatggaatgccctatggga
atattatttgttgcggaaaatagtctacatttggtggagatggtgcatagtaagaggctt
aatgtgcagaaattttatcttggaggcactccaaggaaggttttatatcatagtgaaagc
aggttattgcttgtgatgaggaccgaattgagtcaagatacatattcatccgatatttgt
tgtgttgatcctcttagtggatctgtgctttcatcttttaaacttgaacttggggaaact
ggaaaatccatggagttggtaagggttgtaaacgaacaggttttggtgattggaaccagt
ctgtcttctggtccagctatgatgcccagtggtgaagctgaaagtacgaagggccgtcta
attgtcctctgccttgaacacatgcaaaattcagatagtggttcaatgacattttgttca
aaggcagggtcatcttcccagcgaacatcaccatttcgtgaaattgttggatacgctgct
gaacagttatcaggcagtagcctttgcagcagtcctgatgatactagttgtgatggagtc
aggcttgaagaaagtgaagcatggcagctgcgattggcttacacagccacatggcctggg
atggtacttgctatctgtccttatcttgaccgttactttttggcatctgctggtaactcg
ttttatgtatgtggttttccaaatgataaccctcaaagagtaagaaggtttgctgttgga
aggacacgcttcatgataatgtctttgacagcacattttactagaattgctgttggtgat
tgccgtgatggtgttgttttctattcctatcatgaggattccaggaaacttgagcagctt
tactgtgacccagagcagagattggttgctgattgtattctcatggatgttgatactgct
gttgtttcagatcgcaaagggagcattgctgtcctgtcatgttcaaaccatttagaagat
aatgcaagtccagaatgcaatttaacattgaattgttcatactatatgggggagatagcc
atgagcattaagaaggggtcattttcatataagctgccagcagatgatgttttgaagggt
tgtgatggttctaatacaattatcgacttttcggagaacagtattatggccggtacactg
ttaggaagcataataatgcttattcctatatcgagggaagaacatgagctcttagaagct
gtacaagctagacttgcggttcaccaactgactgctcctattctcggaaatgatcataat
gagtttcgaagccgtgaaaactcagtgagaaaggctggagtatctaagatactggatggc
gacatgcttgctcagttcttggagctcacgagtatgcaacaagaggctgtgttagcatta
cctcttggatcactagagacagttacatcaagttcaaagcagactttgctttctccaatc
tctgtcaatcgtgttgtgcaactacttgagcgagttcattatgcgttgaattga

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