Vitis vinifera (wine grape): 100252496
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Entry
100252496 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100252496
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100252496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100252496
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100252496
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
ARM_TT21
TPR_12
TPR_1
TPR_19
TPR_MalT
TPR_10
ARM_TT21_N
DUF627
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
100252496
NCBI-ProteinID:
XP_002282408
UniProt:
F6HHB1
LinkDB
All DBs
Position
11:join(5314884..5315072,5317488..5317574,5330041..5330217,5330344..5330430,5330509..5330580,5339625..5341586)
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AA seq
857 aa
AA seq
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MDSRDTSLSSAATRDGASPDDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKKED
DPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKKRSEELAHASGENAEAATNLGNKVGSKG
TNTMALQFSAASSGSMVYTDEFDTSVATLNLAIVWFHLHEYGKALSVLESLYQNIEPIDE
TTALHICLLLLDVALASHDVSRCAEIINYLEKAFCVGYTASQGDNVSTAQQQSSNLVVKS
SSIPSNSTVPDASNSDSVASLNSSENPLSRTLSEETLDYETMFSALDIGGQNLTRPAGLP
SLNDLSRAPADRSIPTVDLKLKLQLYKVRILLLTRNLKAAKREVKQAMNIARGRDSSMAL
LLKSELEYARGNHRKAIKLLMASSNQSEMGISSIFNNNLGCIHYQLGKHHTSTIFFSKAL
SGSSSLKKEKTPKLSSFSQDKSLLIIYNCGVQYLACGKPILAARCFQKASLVFYNSPLLW
LRIAECCLMALEKGVLESSGSPSDRSEVRIHVIGKGKWRQLVLENGISRNGHANSVEKGD
WLLGDDRQPKLSMSLARQCLLNALHLLDCSASKFAKFGLSSESTLQENESSEVVSAKNSN
HKNLAGSDSKASNITVGLGQVNANGDAKEQKGGPSLTILQSSIAVYEDICRRENQMIKQA
TLANLAYVELELQNPLKALSTAWSLLKLPDCSRIFTFLGHVYAAEALCLLNRPKEASDHL
STYLSGGNNVELPYSEEDREQWRAEKTMDCEEVNGGSLTGKNPSLEDLQGITFLKPEEAR
GTLYANLATMSAMQGELEQARQFVKQALSIIPNSSEVILTAVYVDLVHGKTQEALAKLKQ
CSHVRFLASSSQLTCSS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggactcgcgagatacatcgctatcatccgctgccaccagggacggcgcttctccggac
gacgatgccggcctctccgttgccgcctctctagccaaggacgctgcgctgctctttcag
tctcggaagttctctgagtgcctcgatgtcttgaatcagctcctgcagaagaaagaggac
gatcccaaggttcttcataatattgctattgcggaatactttcgggatggttgttcagat
cccaagaagttgcttgaagtcttgaataatgtgaagaagagaagcgaagaacttgctcat
gcatctggagaaaatgcggaggctgctaccaatcttggtaataaagttggatctaaagga
actaataccatggcacttcaattctctgctgcaagtagtggcagtatggtttacactgat
gaatttgacacttccgtggcaactcttaacctggcaattgtctggttccatcttcatgaa
tatggaaaggcactgtcagttttggaatcactatatcaaaatattgaacccatagatgag
acaacagctcttcatatttgccttttgttgctggatgttgcgttagcatctcatgatgta
tcaagatgtgcggagataattaattatctggaaaaggctttttgtgttggttatactgct
agtcaaggtgataatgtaagcacagcgcagcaacaatcttcaaatctagtagtaaaatcc
tcttctatccctagcaattcaacggtcccagatgcttctaattctgattcagtggccagt
ctaaactcctcagaaaatcctttatcaagaactttatcagaggagacactcgattatgaa
accatgttttcagctctggacattggtggacagaacctaaccagaccggctggtcttcca
tctttaaatgatctttctagggcccctgcagatcgatctattcctaccgtggacctgaag
ctcaagttgcagctttataaggttcgaattctgctcctcactaggaacttgaaggctgcc
aagcgtgaagttaagcaggctatgaacattgcacgtgggagagattcctccatggctctc
ctcttgaaatctgagcttgaatatgctcgtggtaaccaccgtaaagcaatcaaactcttg
atggcttcaagtaatcagtcagaaatggggatttctagcatttttaacaacaatcttggg
tgcatccattatcaacttggaaaacaccatacatcaactatatttttttccaaggcactg
agtggtagttcttctcttaagaaggaaaagactccaaaactctcatccttctcgcaggat
aaatctcttctcattatatataactgtggagtgcagtacttggcctgtgggaaaccaata
cttgctgctcgctgcttccagaaggctagtttggttttctataattcgcctctattgtgg
cttcgaattgctgaatgctgtctgatggcactagagaagggagtccttgaatccagtggg
tctccatctgatagatcggaagttagaattcatgttattggcaagggaaaatggagacaa
cttgtattagaaaatggaatttcaaggaatgggcatgcaaattctgttgaaaagggtgat
tggttattgggtgatgataggcagcctaaactctcgatgtccctcgcccgacagtgtctc
ttaaatgccttgcacttattggactgttctgcttcaaagtttgcaaaatttgggttgtct
tcagagtcaacactacaggaaaatgaatcaagtgaggttgtatctgccaagaactcaaac
cacaagaacttagctggcagtgattccaaggcatccaatataacagtgggcttaggtcag
gttaatgcaaatggggatgcaaaagaacagaagggagggcctagtcttaccatcttacaa
agctccatcgcagtatatgaagatatttgtagaagagagaatcagatgatcaagcaagcc
actcttgctaatttggcatatgtagagttggaactgcaaaatcccttgaaggccctgtca
actgcctggtctcttttgaaacttcctgattgttccagaatattcacatttttgggtcat
gtgtatgcagccgaggctctctgcttgctaaatcggccaaaggaagcttctgatcatttg
tcaacctatttgtctggaggaaacaatgttgaattgccctacagtgaagaagaccgtgaa
caatggcgagctgagaaaacaatggattgtgaggaagtaaatgggggttcattgactgga
aagaacccttctcttgaggacttacaagggattacgttccttaagccagaagaagctcgt
gggaccctttatgctaatcttgccaccatgtctgcaatgcaaggagaattggagcaagct
cgccagtttgtgaagcaagcattatccataatacccaatagttctgaagtcattcttact
gcagtttacgtggatcttgtgcacgggaagacacaagaagctcttgccaagttgaaacag
tgtagtcacgttaggttccttgccagcagctcacaattgacatgttcttcttga
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