Vitis vinifera (wine grape): 100252593
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Entry
100252593 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100252593 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
vvi03015
mRNA surveillance pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100252593
09122 Translation
03013 Nucleocytoplasmic transport
100252593
03015 mRNA surveillance pathway
100252593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100252593
03041 Spliceosome [BR:
vvi03041
]
100252593
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100252593
Spliceosome [BR:
vvi03041
]
Complex C
Other components
EJC/TREX
100252593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
100252593
NCBI-ProteinID:
XP_002276745
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All DBs
Position
7:join(27958824..27959991,27961482..27961679,27961786..27961937,27962877..27963343,27963450..27963540)
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AA seq
691 aa
AA seq
DB search
MSSPYQVLDNRPIDQWRVTELKEELKRRKLTTKGLKEDLVKRLDEVLRNERENAEEDVDN
GFDHPPSPEAMDKAAEEALLVTKTDNEHVVISDYRNKKVDGATIQVDIDDSAAALVQRKD
LEEITGGTDSMVDKKQDIHAISVKTSTMVSESVVSEKAQGGQGEQNNETQKERGASKPQP
EEDSKSTHDDVMLKSSDPNNQVSEVSPVLGFQVKSDSISTDSVSINEKNELKDNIIADNV
KLDLDVIKPEMVEPSSSSVVPDGGEMHPMDVEEPHEKKVPVEETDNNHATNADLNKKNDS
ADMGSSEKLNLDRSSGDDSMEEDILESKQIDSKYNSDEVGDRSEQTEVLDVKEEGHVNVV
GDVPSADKKGIHVETKDRPVAPPEKRKLQDTAGGNIESSKRQRRWNAESLKVPEPLSSNL
SPSTTPKDAFQATTLKRNFSRSDSTVSEDAPKERVVPPSPKPPTNSLRIDRFLRPFTLKA
VQELLGKTGSVTSFWMDHIKTHCYVSYASVEEAMETRNAVYNLQWPSNGGRLLVAEFVDP
QEVKMRVEAPQAPAAPVNVGPTVPPSPPAKQPQPPPRKQVTRQQLPPPPPLPPPPPLSNP
PQTRERLPLPPPPPLPEKVDPPIVTLDDLFQKTKATPRIYYLPLSEEQVAAKLKAQGKNT
KQSAGVACGKEGGSGRMMTAFWVFRRLLSLG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccccttatcaagttcttgataatcggccaattgatcagtggagagttacagag
ttaaaagaagaactcaagagacgaaaattgacgacaaagggtttgaaggaggatctggtt
aaaaggttggatgaagtacttcgtaatgaaagggaaaatgccgaggaggatgttgataat
ggttttgatcatcctccttcacctgaagccatggacaaagctgcagaggaagcgctgctt
gttacgaaaactgataatgaacatgtggttattagtgattacagaaacaagaaagtggat
ggtgctacaattcaggttgacattgatgacagtgctgctgccttggttcaaaggaaagat
ttagaggaaataaccggtggtaccgattctatggtagataagaagcaagatattcatgca
atttctgtcaaaaccagcaccatggttagtgagagtgtggtatctgaaaaggcacagggt
gggcaaggggagcagaacaatgaaacccagaaggagagaggggcttcaaagccccagccg
gaggaggattcaaagtctacacatgatgatgtcatgctcaagtcttctgatccaaacaac
caggtatctgaggtcagccctgttttagggtttcaagtaaaatctgattctatttctact
gattctgtgtcaattaatgaaaagaatgaactaaaggataacataattgctgataatgtg
aaattagacctagatgttattaaacctgagatggtggaaccatcatccagcagtgttgta
ccagatggtggcgaaatgcatccaatggatgttgaagagccacatgagaaaaaagtacct
gttgaagaaacagataacaaccatgctacaaatgcggacctgaacaagaagaatgatagt
gcagatatgggttcttcagagaaattgaatttagacagaagttctggtgatgattccatg
gaagaggatatattagagagtaagcaaattgattcgaagtataattctgatgaagtgggg
gacaggagtgagcaaactgaagtgcttgatgtaaaggaggaaggtcatgttaatgttgtg
ggcgatgttccatctgctgacaagaaagggatccatgtcgagactaaggacaggcctgtt
gcaccccctgagaaaaggaagcttcaagatacagcaggtgggaacatcgagtcttcaaag
agacaacgcaggtggaatgctgaaagcctcaaagttcccgaaccactaagctctaatctt
tctccttccacaacacctaaggatgcttttcaggctactactttaaaacgaaatttctcc
agatctgattctacagtcagtgaggatgcgcctaaggaacgtgttgttccaccatcacca
aaacctcctactaattccctaagaattgatcgtttcctgcgtccttttaccctgaaagct
gtgcaagaactcctaggaaaaactggaagtgtcaccagtttctggatggaccacataaaa
acacactgctatgtctcttatgcatcagtggaggaagccatggagacacgaaatgcagta
tataacctacaatggccttcaaatggaggacgcctcctggtggctgaatttgttgaccct
caagaagtcaaaatgcgggtggaggctcctcaggctccggctgctcctgtcaatgttggt
cctactgttcctccttcaccacctgccaagcagcctcagcctccccctcgtaagcaggtt
acacggcagcagcttccacccccaccccctcttccacctccaccacctttgtcaaaccca
ccccaaactagggagcggcttcctcttccacctccacctccactacctgaaaaagttgac
cctcccatcgtaacactggatgatctatttcagaaaactaaagcaactcctcgaatctac
tacctacccttgtctgaagaacaagttgctgcaaaacttaaggcacagggcaaaaacaca
aagcagtctgcaggtgttgcttgtgggaaggaaggaggatccggtcggatgatgacagca
ttttgggttttccgaagattgctttctttggggtag
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