Vitis vinifera (wine grape): 100252651
Help
Entry
100252651 CDS
T01084
Name
(RefSeq) RNA polymerase sigma factor SigC
KO
K03093
RNA polymerase sigma-I factor
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100252651
Transcription machinery [BR:
vvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
100252651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
100252651
NCBI-ProteinID:
XP_002275831
UniProt:
D7STK4
LinkDB
All DBs
Position
4:complement(join(539920..540201,541016..541216,541402..541542,542457..542687,542781..543353,543436..543599,544487..544580))
Genome browser
AA seq
561 aa
AA seq
DB search
MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD
PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ
ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF
DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI
RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS
NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV
LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK
SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE
EGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEK
TALANLRDEEICQNLRHYVDV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgggtttcaggctaaacctgaaatgggattttccaatcagttgtcctactctc
accaattcaccatccaggctttgcacatcttcagtccaaggtaaggaggcttcctttgac
tcaacaaggttttctttcccatctgttacttctgaggactgtgagagtctctataaagat
ccattcaagccattcgcatgctcgtcaggagctctacaaacctttgagaatgattactca
gcaatggaggcgatgaaaatgaaaattggcaaatgttcacatggtgatttattcaagata
gtcaatgcttctcaggcacccattggagaggatatatccgcatctgttgcaggtttacaa
gcaagcaaagcatcgcagtttagtttgttattggaaaatcttgatattttagaggagatg
tttgctgattctaacatggtaaggttggaaagggatattatggtgcaattaggaaggctt
ggagctctaaaactattccaaatatgtctatccaggaccctcaaaacatctacatctttt
gatttgtttagcgctcctactgagcatattagggagtgtcaaacaaatggcacagtggat
gatcacttagataaagttgttgttcgctctgggaaaaaggaagaaagaaaatcaaagaga
gaaagagcattggaaaaagctgacaacatatatgcttttccattgccctcaaaaactatt
cgtaaaggtcctggccgacctagtgtttctaccgtaaagagaacattgaactctagaagg
aaaagattgatgaatgctaagaacgaggcagaaatgtcaaagggagtgaagttggttgcc
aacttggagagaatcagagcaactttagaagaagaaattgggcatgtggccagcttgagt
aactgggcagaagctgctggagtcgacaagaaggtgttgcaacaacaattgcagtttggt
tggtattgcagagatgaacttttaaggagtacacactccttagtcttatacattgcaaga
aactacagaggaatgggagtagcctttgaagatatacttcaggcagggaatttaggtgtc
ctgcaaggtgcagaacggtttgaccacacaaagggatacagattctcgacctatgttcag
tactggataagaaaatcaatgtcaactttggtggcacggcatgctagaggggtcaaaatt
ccttttacattaaacagggcaataggtcagatacagaaagctcgaaaggccctttacaaa
agccatggaagatatccagatgataatgaaattgcaaagttcactggtctatctcttgct
aaaattagatcagctggaaattgcctaagggttgtgggttcaactgatcaaagtttccaa
gattgttggggtgcaacaattctggagtttacaccagatacatcaataaagagccctgaa
gaaggtttcatgcagcaatgcaagagaaaagacattcacaatcttctgaaaggtttagac
ccaagagagaggcaaattttggtgttaagatatggttttggggagcaacagcgcaagtca
ctagaagagattgggagacgtttcaatgttagcaaagagtggataaggaagttagagaaa
acagcactggcaaatctaagggatgaagaaatctgccaaaatttgagacattatgtggat
gtgtag
DBGET
integrated database retrieval system
