Vitis vinifera (wine grape): 100252838
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Entry
100252838 CDS
T01084
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi04120
Ubiquitin mediated proteolysis
vvi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100252838
04120 Ubiquitin mediated proteolysis
100252838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vvi04121
]
100252838
Enzymes [BR:
vvi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100252838
Ubiquitin system [BR:
vvi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100252838
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_Vps41
zf-RING_16
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
100252838
NCBI-ProteinID:
XP_019081686
UniProt:
F6HEG3
LinkDB
All DBs
Position
16:join(2257028..2257560,2259003..2259179,2260395..2260544,2260635..2260840,2261648..2261789,2262309..2262336,2262525..2262629,2263706..2263873)
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AA seq
502 aa
AA seq
DB search
MIKLQTYAGLSLVATLAVIYHAFNSRGQFYPATVYLSTSKISLVLLLNMGLVIMCILWQL
TKRVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLLILDSLFLYSSLKYLIQTRQASVSLLFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSLYLCFFLVIFMNYG
VPLHLIRELYETFRNFRVRIADYIRYRKMTSNMNDRFPDATPEELDASDATCIICREEMV
TAKKLICGHLFHMHCLRSWLERQHTCPTCRALVVPPENGTTTAGGQHGPRSDFHQASTST
QGLTGDVADDNLNWHRARLQAAASAAAIYEKSFVYPSPNTLVWSPGYVSLPQASGATMNY
GDRLSGDLNIPGSQMEAQKKFLEYHIEVLQNQLQLLQKLSKPEEGMGMAPTASSAGKGKD
VASSSSSVPDSGHHGEIEETDT
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgattaagctgcaaacatatgcggggcttagtttagttgctactctggctgttatctat
catgcgtttaacagtagaggccagttctacccagctacagtttatctatcaacgtccaaa
atcagtttggtgctcctcctcaacatgggtctagtcatcatgtgcattctgtggcaacta
actaagcgtgtttttcttgggtccctacgagaagctgaggttgagagactgaatgagcaa
tcatggcgggaagtcatggaaatactttttgcaataactattttccgacaggacttttca
gttacttttcttgctatggttactgctcttctgttaatcaaagctttacattggttggcc
cagaagagagttgagtacattgagacaaccccttcggttcctatgttgtctcatatccgt
attgtatcatttatgggcttccttcttatcctggatagtctctttctgtacagttcttta
aagtatttgatacaaacacggcaggcttcagtttccctcctcttttcttttgagtacatg
atactcgcaacaacaactgtgtcaacattcgtaaaatatgttttctatgtcagtgacatg
cttatggaaggacaatgggagaaaaaggctgtctacaccttttacttggaacttatacga
gacttgcttcacttgtctttgtatctgtgcttctttcttgtgattttcatgaattatggt
gtgcctttgcacttgattcgggagctctatgaaacattccgtaacttcagggtccgtatt
gctgattacattcgttataggaagatgacttcaaatatgaatgatcgttttccagatgca
acgcctgaagaacttgatgcaagtgatgcaacctgcatcatttgtcgtgaggagatggtt
acagccaagaaactaatttgtggacatctttttcatatgcattgtctccgttcatggtta
gagcgacagcatacttgtcctacttgcagagccctagttgtaccccctgaaaatgggaca
actactgctggagggcaacatgggccacggtctgattttcatcaagcaagtacatccaca
cagggtttgactggtgatgtagcagatgataatttgaattggcatcgggccagactccaa
gctgctgcttcagctgccgcaatatatgaaaaatcttttgtgtacccttctccaaataca
ctagtgtggtcccctggatatgtatcactcccccaggcatctggtgccaccatgaactat
ggagatagactcagtggtgatctaaacataccgggctctcagatggaagctcagaagaaa
tttcttgaataccatattgaggtcttgcaaaaccagctccaacttctacagaaactatcg
aaaccagaggaaggcatgggcatggcccccactgcatcatcagctggcaagggaaaggac
gttgcttcttcatcttcttctgttccagactcgggtcatcatggagaaattgaagaaact
gatacatag
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