Vitis vinifera (wine grape): 100253140
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Entry
100253140 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100253140
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100253140
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vvi01002
]
100253140
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vvi04121
]
100253140
03036 Chromosome and associated proteins [BR:
vvi03036
]
100253140
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100253140
Peptidases and inhibitors [BR:
vvi01002
]
Metallo peptidases
Family M67
100253140
Ubiquitin system [BR:
vvi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
100253140
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
100253140
BRISC complex
100253140
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
100253140
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
100253140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
DUF4983
Motif
Other DBs
NCBI-GeneID:
100253140
NCBI-ProteinID:
XP_002285369
UniProt:
A0ABY9CJ30
LinkDB
All DBs
Position
9:join(5869895..5870005,5874858..5874983,5875547..5875634,5879911..5879996,5880086..5880304,5887038..5887222,5890477..5890635,5890769..5890849,5890934..5890988,5891446..5891649)
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AA seq
437 aa
AA seq
DB search
MSLTCVKMSEDVWLTCTTHALSTETEEIMGLLLGDIEYSKNGSVTALIWGASPQTRSDRR
KDRVETNPEQLAAASAQAERMTVATGKTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIFSCFSEDAQKVGRIQVIAFQSTDGKQSNMSRPISLSPVHRSSIIDVESSFSSS
ENAPAKSGPARVESSEQDTGDSRTMALVNKGGGRSSDLGGFFANADANYLGRDKMGGNYH
TNNSENAVVDVDPMDMSESMQEAMHRSNLDMSGAEYVRKEVPLLVFPTLSLLKLDSPLTS
FTDLQRVLYEEERAAYNQAIVQNMRDGKVHPLAFIHHTSTYQASMCKLMEYCLSPAINAL
QDRLKENEIRLAILTDEARTLETEAFKGSESSSGSPRNFQSHGIRGSASFGHRDLYPAES
INLRSVAGPGSRSRRGS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgacgtgcgtgaagatgagcgaagatgtgtggttgacatgtacgactcatgca
ttgtctactgagactgaagagatcatgggacttcttcttggtgatattgagtactcaaaa
aatgggagtgtgactgcactgatttggggagcatcaccacaaacgaggtctgatcggcgg
aaagaccgagtagagaccaatcctgaacagttggcggctgcatcagctcaggctgagaga
atgactgtggcaacaggaaaaactacaagagtgattgggtggtaccattcgcatcctcat
attacagtgcttccttcccatgttgatgtacgaactcaagcaatgtatcaacttttagat
tctgggttcattgggctaatattttcctgttttagtgaagatgctcaaaaggttggaagg
atccaagttatagccttccagtccacagatgggaagcagagcaacatgtcaagacctatt
tctctttcccctgtacacagaagttcaattatagatgttgaatcatcttttagttcctca
gagaatgcacctgcaaaatctggccctgcaagggtggaaagctctgaacaagacactggt
gattcaagaacaatggctttagtaaacaagggtgggggaagatcttcagacttggggggt
ttctttgctaatgctgatgccaactatctagggcgagataaaatgggaggaaactatcat
accaacaactctgagaatgccgttgttgatgtagaccccatggatatgtcagaaagtatg
caagaagcaatgcatcgctcaaatttggacatgagtggtgcggagtatgtgagaaaagaa
gtccctctccttgttttcccaaccttgtctcttctcaagctcgattcacctttaacttct
tttacggatttgcaacgtgtgctatatgaagaggagagagcagcatacaaccaggccatt
gtacagaatatgagggatgggaaagttcatccactggctttcattcatcacacatccaca
tatcaggcttccatgtgcaaattgatggagtattgtttaagtcctgccataaatgccctc
caggaccgtttgaaagaaaatgaaatacggctagcaattctgactgatgaagccagaact
ttggagactgaggccttcaaaggaagcgagtcaagctctggatcccctcgtaactttcaa
tctcatggcatccgaggaagtgcttcatttggtcatagagacttatatcctgctgaatcc
attaatttaaggagtgttgctggtcctggtagccggagcagaagagggtcttaa
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