Vitis vinifera (wine grape): 100253654
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Entry
100253654 CDS
T01084
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100253654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100253654
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
100253654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Motif
Other DBs
NCBI-GeneID:
100253654
NCBI-ProteinID:
XP_002262798
UniProt:
D7TRJ8
LinkDB
All DBs
Position
10:complement(join(2086227..2086316,2086835..2087047,2087171..2087383,2087571..2087705,2087910..2088025,2090605..2090981,2091267..2091412,2102645..2102803,2103031..2103201))
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AA seq
539 aa
AA seq
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MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN
VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL
EDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSD
KAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEA
VGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDA
EDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRKSN
GDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTE
DEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatctgatgttgaagccctcatgcagcggctgtggatccaccacggatttg
tacggaagcaactgcaagcacatgactctctgcttgtcgtgtggcaaaaccatggcagag
aaccacgggaaatgctacgactgtggcacccctgtcactcgattgattagggaatacaat
gttcggacgaattccagcggcgataagaattacttcattggtaggtttgtgactggtttg
ccgggtttttcaaagaagaaaaatgctgataataaatggtctctgcataaagaggggctt
caaggacgccaagtttctgatgctttgcgggagaagtacaagaataaaccttggctcttg
gaggatgaaacaggtcaatatcagtatcatggtcagcttgagggttcacaatcagcaact
tactacctactaatgatgcaaggaaaggaatttgttgctattccagctggatcttggtac
aactttaacaaagttgctcagtataagcaactcaccttggaggaagcagaagagaagatg
aagaataggaggaggactgcagatggatatcaaagatggatgatgaaggcagcaaataat
ggacctgctgcatttggtgaagtggagaagcttgatgacaaggagactggtggtgcagct
ggtggtgggaggggacgtaaaaaacaaactggtgatgaagaagaaggtaatgtctcggat
aaggcagaggaagatgaagaagaagaggcagaaaggaagaacagacttggacttaacaaa
agaagtggtgatgacgatgaagaaggtccaagaggtggtgatcatgatttagatgatgat
gatattgagaagggtgatgattgggagcatgaagaaattttcactgatgacgatgaagct
gttggtaatgatcctgaggaacgggaagatttggcacccgaagttcctgcacctccagaa
ataaagcaggatgaagaggacgaagatgattctaatgaagaggagggaggattaagcaaa
tctggaaaggagttgaaaaaactgcttggaaaagctgctggaatgaatgattcggatgca
gaggatgacgatgacgatgaagaagaagatgagattggcctttctcctgtgctggctcca
aaacagaaggatgtacctaaagaagagcctgctgataacagtcctatgaaatcagctact
gcttctgctcggtcaacaccacctacttcaaaatcatcaaaagggaagagaaagtcaaat
ggtgatgacatgaaaacaactaatggtggacctccaaagaaggtgaagacagaaaatgaa
tcaaaatcttctgcaaaagatgaaggcccatctccttctaaagttactgcaactccaaag
ggaacgccatcatcatctgtgaaaactggatcaacatcgtcagctggaccagtcacagaa
gatgaaatcagggctgttttattgcagaaggcacctgtgaccactcaggatcttgtcgcc
aaatttaaagccagactgaaatcccaagaggataagaaggcttttgctgatatactgagg
agaatctctaagatacaaaagactaatggacctaactatgttgtgttgagagataaatga
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