Vitis vinifera (wine grape): 100253689
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Entry
100253689 CDS
T01084
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100253689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100253689
03009 Ribosome biogenesis [BR:
vvi03009
]
100253689
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100253689
Spliceosome [BR:
vvi03041
]
Complex A
U2 snRNP components
U2 related factors
100253689
Complex B
100253689
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100253689
Ribosome biogenesis [BR:
vvi03009
]
Eukaryotic type
90S particles
Helicases
100253689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
AAA_7
T2SSE
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
AAA_33
Motif
Other DBs
NCBI-GeneID:
100253689
NCBI-ProteinID:
XP_002278247
UniProt:
A5ADC4
LinkDB
All DBs
Position
7:join(4631416..4631703,4632718..4632920,4633047..4634131,4634563..4634688,4634797..4635035,4635145..4635263,4637455..4637581)
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AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKISKSNGSGAINNNNNNNLVNRWNGRPYSQRYYEILEK
RRTLPVWHQKEEFLQVLKANQSLILVGETGSGKTTQIPQFVLEAVDIETPDKRKKMMIAC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKVVVMSATLEAEKFQGYFNGAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEGAGDILVFLTGEEEIEDACKKISK
EIANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGPPGRKIVVSTNIAETSLTI
DGIVFVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDVRGEWLVDVAPHYYDLANFPNCEAKRVLEKLYKKREKD
REESRNRK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggggacagagaggaagaggaaggtaagcttgttcgatgtggtggacgagacctcagtc
tccgccaaaatctccaaatccaacggcagtggtgccatcaacaacaacaacaataacaat
ctcgtcaacagatggaatggacgcccctactcgcagaggtattacgagattctggagaag
aggaggactcttccagtttggcaccaaaaggaggagtttttgcaggttctcaaggccaac
caatccctaatcttggttggtgaaactggtagtggtaaaacaactcagattcctcagttt
gttttggaagctgttgatatagaaactccagacaaacgcaagaagatgatgattgcctgc
acccagccccgtagagttgcagcaatgtctgtgtctcgtcgtgttgctgaagagatggat
gtaacgattggagaagaagttggttatagcattcgttttgaggactgcagtagtgcaaga
acagttttgaagtatttaacagatggtatgcttttaagagaagccatgactgacccactg
ttggagcggtataaagtaataattcttgatgaggctcatgaaagaactttggcaacagat
gttttgtttgggcttttgaaggaggttctgaaaaataggcctgacttgaaagtcgttgta
atgagtgctactcttgaggctgaaaagttccagggttatttcaatggtgctcctcttatg
aaggttcctggcaggcttcaccctgtagaaattttctacacccaggagcctgagagagac
tatttggaagctgcaattcggacagttgtgcagatacacatgtgtgaaggtgctggtgac
atacttgttttccttactggggaagaggagattgaagatgcttgcaaaaaaatatcaaaa
gaaattgcaaatttgggggatcaggtggggcctgtgaaagcagtgcctctgtactcaaca
cttcctcccgccatgcagcagaagatatttgaacccgctccaccaccactgacggagggt
ggtcctccaggaaggaaaattgttgtctcaaccaacattgcagaaacttcattgaccata
gatggcatagtatttgttattgatccggggtttgctaaacaaaaagtttacaacccacga
gtgcgtgttgaatctttgttagtatctccaatatcaaaggcaagtgcacaccagagatct
ggacgtgctggtagaactcaaccagggaaatgtttcaggctctatacagagaagagtttt
aacaatgatcttcagccacagacctacccagagatactgcgatcaaaccttgcaaatacg
gtcctcaccttgaaaaaacttgggattgatgatcttgtccattttgattttatggaccct
cctgcccctgagacattgatgcgagcactagaggtgttaaattacttgggagctttggat
gatgatggaaacttgaccaagttgggtgaaataatgagtgaatttcctttagatcctcag
atgtccaagatgcttgttgtcagtcctgaattcaactgttccaacgaaattctgtctatt
tcagccatgctctcagtacccaattgctttgtccggcctagggaggctcaaaaagctgca
gatgaagcgaaagctcggtttgggcacatcgatggggatcaccttacactcttgaatgtg
taccatgcatacaagcaaaacaatgaagatccatcttggtgttacgaaaattttgtcaat
cagagggcattgaaggctgcagataatgtgagacaacagctagtgcgcatcatggccaga
ttcaacctcaaattatgcagcacagatttcaacagccgggactactacatcaacataaga
aaggctatgctagctggatattttatgcaggttgctcacctggagcgcactgggcactat
ttgacagtgaaagacaaccaagtggtacacttgcatccttcaaattgccttgatcacaag
ccagagtgggtgatttacaatgagtatgttttaaccagcaggaattttattcgcacagtt
acagatgttcgtggcgaatggctagttgatgtggcgccacattactatgatcttgcaaac
ttccctaattgtgaggcaaagcgtgtcctggagaagctttacaagaagcgggagaaagac
agggaggagagccggaacagaaaataa
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