KEGG   Vitis vinifera (wine grape): 100253711
Entry
100253711         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100253711 isoform X2
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100253711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100253711
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100253711
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100253711
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965 MsrA_helical
Other DBs
NCBI-GeneID: 100253711
NCBI-ProteinID: XP_059595286
LinkDB
Position
8:complement(join(22264393..22264459,22269455..22269636,22269726..22269860,22269952..22270230,22270400..22270542,22271051..22271216,22272304..22272474,22273787..22274524,22275032..22275082,22276393..22276503,22276729..22276875,22276956..22277045,22277595..22277645,22278152..22278268,22280198..22280329,22280400..22280492))
AA seq 890 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA
KSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKAHIMKLEL
ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESLEDLVTI
GAPGLVKGAPALSLKNSLTPTQIPATVTSPLQQSTSIQEQSEETASQDSNSEIGPRTPPA
KNSVIGSSASSTPTGSHATPIPLNVSAHNLSASPAPTILPSSTSVRGVLENAGTAISSPV
NVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGITIPSNGGLG
AVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGLADSSSVGEA
AVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQRLQQVQQQTQS
TILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPGLNTVTSAAIQQ
QPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPSSLGKNLMNEDD
LKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSISDLGAIGD
TLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTPPSYPQVQAPI
VNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEE
PKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq 2673 nt   +upstreamnt  +downstreamnt
atgggggcgagtcgaaaactacaaggcgagattgacagggttctgaagaaggttcaggaa
ggcgtggatgttttcgatagtatctggaacaaggtttacgacacggataatgccaatcag
aaggagaagtttgaggctgatttgaagaaggagatcaagaaacttcagcggtatagagac
cagatcaagacatggattcagtccagcgagatcaaggacaagaaggctctgctggatgct
cggaagcttatcgagcgtgaaatggaaagatttaagatatgtgaaaaagaaactaagaca
aaagcattctccaaagaagggctgggccaacaacctaaaactgacccaaaggagaaggct
aaatcagagacaagggactggttgaacactgtggtgggggagttggaatcccaaattgat
agctttgaagctgaaattgaagggctatctgttaaaaaaggaaagacaagaccacctaga
ctgacacatttggagacatctattgctagacacaaggctcatataatgaagttagaactg
attttgaggctactggataatgatgaattgagtcctgagcaggtcaatgatgtaaaagac
ttcttggatgattatgtggaacgtaatcaggaggactttgaagaatttagtgatgtagat
gacctttacaactctttgccattagacaaggtggaatcacttgaagatctggttacaatt
ggtgctccaggccttgttaagggtgcaccagctctaagcttgaagaattctttgacacca
acccaaataccggccacagtcacatctcctcttcaacagagtacttccatccaggaacaa
tccgaggagacagcttcacaggacagcaattctgagattggtccaagaactccacctgcc
aaaaatagtgtaattggttcttctgcttcatcaacaccgacggggagccatgcaactcct
atacctttgaatgtttcagctcataatttgtctgcatcacctgctccgacaattcttccc
agttctacttctgttcgaggtgtcctggaaaatgctggtactgctatttcatctcctgtt
aatgtgtctagttctgcaaaggaagaagagattgcaagcttcccaggcaggagatcttca
cctgctcttgttgaaactggactagtgaggggcattggtagaggtgttccatccagccaa
ccatcaacaagtgtcccacttagttctggcattacaattccaagcaatggaggccttggt
gcagttccttcagccaatgacatgtcaaagagaagtactttaggtgctgatgagagactt
gggggtggtggtatggtgcagcctttggtttccccactgagtaatagaatgatcttgcca
caaactgccaagactaatgatggaactggcttggctgattctagtagtgttggagaggct
gcagtcatagctggcagagtcttctctccttctgtagttcctggcatgcaatggaggcca
ggaagttcctttcagaatcaaaatgaatcgggacagtttcggggaagaactgaaattaca
cttgatcagaaggagaaatttttgcagcgtctccagcaagtgcagcaacaaactcagagt
accattcttggtatgccccctctttctggaggaaatcataagcagttctctgcacaacag
caaaacccactcttgcagcagtttaattctcaaagctcatctgtctcacctcaagttggt
ctgggagttggagtccaggcacctggtctcaacactgttacatctgccgccatacagcaa
cagccaggttccatccaccaacagtctaatcagcaagctttgttatctactggtccaaaa
gatgctgatgttggccatgtcaaagctgaggaccagcagcaacaacaaaatgtatctgat
gactcgacaatggaatctgctcctagttctcttggaaagaatctcatgaatgaggatgat
ttgaaagctccatatgcaatggacacatctgcaggagtatctggctctttgacagagcct
tcccaagtgccaagagatactgatctctctcctgggcaacctgtacaatctaaccaacct
tctggcagccttggtgttattggtcgaagaagcatatctgaccttggtgcaataggtgat
accctcagtggatcagctgtgaattctggggggatgcatgatcagctttacaatctacag
atgcttgaggctgctttttacaagcttcctcaacctaaagactcggaacgtgcaaggaac
tatactccaaggcaccctgctgtgacccctccaagctatcctcaagtacaggcacccatt
gtcaataatcctgccttctgggaacggctgggtcttgatacttttggcactgacaccctg
ttctttgcattttactatcagcagaatacttatcagcaatatttggctgcaaaagaacta
aagaagcaatcgtggagataccacaggaaatataacacatggtttcagaggcatgaggag
ccaaaagttgccactgatgaatttgaacaggggacatatgtgtactttgatttccatatt
gctaatgatgacctacaacatggatggtgccagaggatcaagactgaattcacttttgaa
tataactatctcgaagatgaacttattgtatag

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