Vitis vinifera (wine grape): 100254172
Help
Entry
100254172 CDS
T01084
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100254172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vvi03009
]
100254172
Ribosome biogenesis [BR:
vvi03009
]
Eukaryotic type
Pre-60S particles
RNases
100254172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
100254172
NCBI-ProteinID:
XP_010652773
LinkDB
All DBs
Position
7:join(26921723..26921755,26921911..26922093,26922179..26922268,26922983..26923051,26923828..26923968,26924084..26924200,26924271..26924340,26924547..26924647,26925344..26925478,26925568..26925675,26935477..26935581,26936150..26936482)
Genome browser
AA seq
494 aa
AA seq
DB search
MDNTLVNAEKEVLVEMVKLAQKRGLEGSKGSWKDFLSTYDRKLGPSLSDPSRRPVDTLVS
FLKTFSKEEDLKFFAKILQCYANRKVVEEFKTKSHGKESPEQRLIRLTLEHPQYPLDYSF
PSHEEGWMVTKIRQKFKFTRSNAMLAVDCEMVLCEDGTEGLVRVCVVDRNLQVKLNELVK
PHKAVVDYRTEITGVSAKDFDETTSSLVDIQRSMKKLLSHGAVLVGHSLHNDLKALKLDH
ARVIDTAFIYKYENQPINRRPSLNNLCKSILGYEVRQKDAPHNCLDDASAAMKLVLAKLE
QGLDDAIPFVHEDVPENEMAKLLLHRIPTDVPIEELNRIIPGEFTMEHQPRKKVRGEYYS
ALAIFRNSQEAYEAFENIRGTQGKDSSGRSQKSVSFQLGTGATASLYVRKMAHNDSLGQV
SSRKRSPQVEEISGDSKKLKTEEKTGDKEMMVDTNQCEDHMKEIERLKAVLSQRDNEIST
LHKIITSLTRKQGL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggataacacactcgtcaacgctgagaaagaggttctcgttgaaatggtgaaattggct
cagaaacgaggattggagggctccaaaggaagctggaaggattttctgagtacttacgat
aggaagcttgggccaagcttgagcgatccatcgaggaggcctgttgatacattggtgtct
tttctgaagacattctccaaagaggaagacctaaagttttttgcaaaaatattgcagtgt
tatgcaaaccgcaaggtagttgaggaattcaaaacgaagtctcatggaaaggagtccccc
gagcagaggctgatccgcttaactcttgaacatccgcaatacccattagattattcattc
ccatcccatgaagaggggtggatggttacaaaaattcgtcaaaagttcaagtttacaaga
tcaaatgcaatgcttgctgttgattgtgagatggttctctgtgaagatggaactgaaggt
ttagtgagggtatgtgttgtggatcgcaatttacaggtcaaacttaatgaacttgtaaag
ccccataaagcggttgtagattatagaactgagattactggagtcagtgcaaaagatttt
gatgaaactacttcctcattggtagatatacagagatccatgaagaagctattatcacat
ggagctgttttagttggtcacagtttgcataatgatctgaaagcactgaagttggaccat
gcaagggtgattgacactgcatttatctacaaatatgagaaccaacctattaacagaaga
ccttctttgaacaatctgtgcaagtctatcttgggctatgaagtgcgtcagaaggatgct
ccgcacaattgtctagatgatgcatctgctgcaatgaaacttgttcttgccaagttagag
caagggttggatgatgctattccctttgttcatgaagatgtgcctgaaaatgaaatggcg
aagctgcttctccacaggataccaactgatgtgcccattgaagagttaaatagaattatt
cctggggaatttaccatggaacaccagccaaggaagaaagttcgaggagaatattattct
gcccttgccatctttaggaattcacaagaggcatatgaagcatttgaaaacattcgaggg
acccaaggaaaggattcatctggacggtcacagaagtccgtctcatttcagctcggcaca
ggagcaactgctagtctatatgttcggaaaatggcacataatgattcccttggtcaagtc
tcatcaaggaagagatccccccaagttgaggagatctcaggtgactccaagaagttaaag
acggaggaaaaaacaggggacaaggagatgatggtagacacaaatcagtgtgaagatcat
atgaaagagattgaaaggttgaaagcagttctgagtcaaagagataatgaaatatccacc
ttgcataagatcataacttcccttacaaggaaacaaggactctaa
DBGET
integrated database retrieval system
