KEGG   Vitis vinifera (wine grape): 100254201
Entry
100254201         CDS       T01084                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100254201
  09122 Translation
   03013 Nucleocytoplasmic transport
    100254201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100254201
   03041 Spliceosome [BR:vvi03041]
    100254201
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100254201
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   EJC/TREX
    100254201
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100254201
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 TPR_MLP1_2 FlxA FapA LIM_bind
Other DBs
NCBI-GeneID: 100254201
NCBI-ProteinID: XP_010649318
UniProt: A0ABY9BCT8
LinkDB
Position
1:complement(join(5807780..5807849,5808273..5808571,5814119..5815288,5816630..5817097,5817231..5817311,5817415..5817570,5818099..5818203,5818419..5819025,5819149..5819330,5819670..5819850,5820648..5820751,5821971..5822099,5822195..5822291,5833084..5833211,5856442..5856501,5856598..5856717,5856826..5856906,5857004..5857246,5857354..5857561,5857775..5857855,5858700..5858893,5859334..5859409,5862181..5862314,5862469..5862537,5862663..5862710,5862817..5862888,5863438..5863518,5864079..5864141,5864240..5864299,5865275..5865316,5869188..5869313,5869842..5869976))
AA seq 1889 aa
MSLPPIECIHVTDDCLREWKSGNPSFKVSGTVPMLRFLYELCSTLVRGELPLHKCKVALD
SVEFSDKEADEELASNFADIVTQMALDLTMPGENRARLIKLAKWLVESTLVPLRLFQERC
EEEFLWESEMIKIKAQELKNKEVRVNTRLLYQQTKFNLVREESEGYSKLVTLLCQGSESS
SQNASAATIGIIKSLIGHFDLDPNRVFDIVLECFEHQPDNSVFLDLIPIFPKSHASQILG
FKYQYYQRMEVNNRVPPGLYQLTALLVKEEFIDLDSIYAHLLPKDEEAFEHYNVFSAKRL
DEANKIGKINLAATGKDLMEDEKQGDVTIDLFAALDMETEAVAERSSELENNQTLGLLTG
FLAVDDWYHAHILFDRLSPLNPVAHIEICNGLLRLIEKSISTAYGIVHQAHLESFGLSSS
GSDLMETTNSSVNRSFIDLPKELFQMLACVGPYFYRDTILLQKVCRVLRGYYLSALELVR
SGDGAYNPESGVGGNRVPRLHLKEARSRIEEALGTCLLPSLQLIPANPAVCQEIWEVMNL
LPYEVRYRLYGEWEKDDERIPVVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGKGIELLLLQELIQQMANVQYTEN
LTEEQLDAMAGSETLRYQATSFGITRNNKALIKSTNRLRDSLLPKEEPKLAIPLLLLIAQ
HRSVVLINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPATAYAQLIPPLEELVHMYH
LDPEVAFLIYRPVMRLFKCRSSSNIFWPLDDVESTNMSTAEKESEPTDSSGEVILDLGPP
WKPIVWSDLLDTARTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRHRYESEIAKQHSALK
ALEELSDNSNSAITKRKKDKERIQESLDRLTSELQKHEENVASVRRRLAREKDKWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEAGRLGRFLYETMKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSLASKSLAGNLVAVPNGSG
LNIFQNESSGGRTVASGTQHLDAGNSVKEQVLRAKTVDGRLERTESVSLVKSDPVHAKVK
GGSSVNGSDIQQSMPSAASHTGTSRSGENQRPVDESTNRTLDESTVKVSSRASTESELRA
TGKRSLPSGSLTKQPKLDVAKDDSKSGKGVGRTSGSSTSDRDLPAHQLEGRQSGVTNVSS
AGTADGSVGKGSTQSTRTSLDIHGSESKPESGSSKSADLRLSAVKDDGNEVSDRAPSSRP
IHSPRHDNSATIKSGDKQQKRTSPAEEPERVNKRRKGDTEVRDFEGEVRFSDKERSMDPR
LDKSHAVDLDKSGTDEQGISRATDKPSDRLKDKGSERYERDHRERLERPDKSRGDEMIAE
KSRDRSMERHGRERSVERVQERSSERSFDRLTDKVKDERNKDDRGKMRYSETSVEKSHAD
DRFHGQSLPPPPPLPPHMVPQSVTASRRDEDADRRFGTARHAQRLSPRHEEKERRRSEEI
SQDDAKRRREDDIRERKREEREGLSIKVEDREREKASLLKEDMDPSAASKRRKLKREHMP
SGEAGEYTPAAPPPPPPAISMSQAYDGRERGDRKGAMVQRAGYLDEPGLRIHGKEVTGKM
ARRDADQMYDREWDDEKRQRAEQKRRHRK
NT seq 5670 nt   +upstreamnt  +downstreamnt
atgtctcttccaccgatagagtgcatacatgtcacagatgactgtcttcgggaatggaaa
agtggaaaccctagcttcaaagtctcgggtactgttcccatgctccgcttcctctacgag
ctttgctctaccctggttcgcggtgaattaccacttcacaagtgcaaagtggcattggat
tcagtcgagttttctgataaagaagcagatgaagaattggcttccaattttgcagacatt
gttacacaaatggccctagatcttacaatgcctggagagaaccgtgctcgtcttattaaa
ttggcaaaatggttagtggaatctactttggtcccattgaggcttttccaagagcgctgt
gaggaagagttcctctgggagtctgaaatgatcaaaataaaggctcaagagttgaagaat
aaagaggttagggtaaacactcgtcttctttatcagcagacaaaattcaaccttgttagg
gaagagagtgagggctattccaagctggttacccttctatgtcaaggttctgaatcttca
agtcaaaatgcatcagcagcaacaataggcattattaagtcattaattggacactttgat
ctggacccaaaccgtgtctttgatattgttttggagtgttttgaacatcagcctgataac
agtgtcttcttggacctgattcctattttccccaagtctcatgcttcacaaatacttggt
tttaaataccaatattatcagcgcatggaagttaataatcgtgttccacctgggctctat
cagctgacagctttgctggtaaaggaagagtttattgatcttgatagcatatatgcacat
ttacttcccaaggatgaagaggcatttgagcattataatgttttttctgctaagcgactt
gatgaggccaacaaaatcggcaaaataaatctggctgctactggaaaggatctcatggag
gatgagaaacaaggagatgtcacaatagatctttttgctgctttggacatggaaactgag
gcagttgcagagcgttcttcagagcttgaaaataatcagactttggggttgcttacagga
tttcttgctgtggatgactggtaccatgctcatatactatttgatcgtctttcaccactt
aatccagtggcacatattgaaatttgcaatggcttgttaaggctcattgaaaaatcaatc
tctacagcatatggtatagttcatcaagcacatcttgaaagctttgggttgtcctcatct
ggttctgatttaatggagacaacaaattcatcagtcaataggtctttcattgaccttcct
aaagaactttttcagatgcttgcttgtgttggaccttatttctaccgtgatactatattg
ctgcagaaggtttgtcgagtattgagaggttattacctgtctgctcttgagcttgtacga
agtggtgatggagcctacaaccctgaatctggtgttggtggaaatcgagttcctcgtttg
cacctaaaggaagctcggtcaagaattgaggaagccctgggaacatgtctacttccttcg
ttgcagttgatacctgcaaatccagcggtttgtcaggagatttgggaagtaatgaatctc
ctcccatacgaggtgcggtatcggttatatggtgaatgggaaaaagatgatgagcgcatt
ccagtggttttggctgcaaggcaaacagccaagttggacactagaaggatcttgaaacgg
cttgcgaaggaaaacctaaagcagctgggtcggatggtagcaaaactagctcatgccaat
ccaatgactgtacttcgaacaattgttcatcagattgaggcatacagggatatgattact
cctgttgtagatgctttcaaatatttgacgcagcttgagtatgatgttctggaatatgtc
gtgattgagcgcctggcacaaggtggtcgtgacaaactaaaggatgacggacttaatttg
tcggactggcttcaatctttggcttcattctggggtcacttgtgtaaaaaatacccatca
atggaattgaggggccttttccagtatcttgtgaatcagttgaaaaagggaaaaggaatt
gagctattactcttgcaggaactgatccaacagatggcaaatgttcagtacacggagaac
ctgactgaggaacagttggatgctatggcagggagtgagaccctccggtatcaggctact
tcttttgggataaccagaaacaacaaggcattgatcaaatcgactaacagactaagggat
tcattgcttccaaaagaagaaccaaagttggcaattccccttttattgctcattgctcag
catcgttctgttgttctcataaatgcggatgctccatacattaagatggttagtgagcag
ttcgatagatgccatggaacccttcttcaatatgtggaattcctttgtagtgcagtgaca
ccagcaacagcttatgctcagctgattcccccactggaggaacttgtccacatgtaccac
cttgatcctgaggtggcctttttaatttatcggcctgtgatgaggctgttcaagtgtcgg
agtagttctaatatcttctggcctttagatgatgttgaatctacaaatatgtctactgca
gaaaaggagtctgaacctacagactcttctggtgaagtgattcttgatcttggccctcct
tggaagcctattgtgtggtcagatcttcttgatactgcacgtaccatgttgccatcaaaa
gcctggaatagcctctctcctgatctctatgctactttctggggtctcacactctatgat
ctttatgttcctagacatcgctatgagtctgaaattgccaagcagcattctgctcttaaa
gctctagaagagctttctgataattcaaattctgcaattaccaaaagaaagaaagacaag
gaaagaattcaagaatctctagatcgtttaactagtgaactccagaagcatgaggagaat
gtagcatctgtccgtagacggcttgcccgtgaaaaggacaagtggttgagttcctgtcct
gatactttgaagattaacatggagttccttcagcgctgtatctttcctcgctgtactttc
agtatgcccgatgctgtgtattgtgctatgttcgtacacactcttcattcccttggaaca
ccattctttaacacagtcaaccacattgatgttctgatatgtaaaaccttgcaacctatg
atatgctgctgtactgaatatgaagctggtagacttgggaggtttctgtatgagactatg
aagattgcttactattggaagagtgatgaatcaatatatgaacgggagtgtgggaacatg
ccaggctttgctgtctattatagatatcctaacagtcagcgtgtcacatatggccagttt
attaaggtacactggaaatggagtcaaagaatcacacggttattgattcagtgcttggaa
tcaactgagtacatggaaattcgaaatgctcttataatgttaactaaaatttctagcgtc
ttccctgttacacgaaagagtggaattaaccttgaaaaacgggtagctaaaattaaaagt
gatgaaagagaggatctcaaggtgttggctacaggtgttgctgcagctttagctgcgagg
aagccttcatgggttacagacgaagaatttggcatgggctatcttgaactgaagcctgca
ccatcgcttgcttcaaagtctttagctggtaatttggtagctgtcccaaatggctctggc
ctgaacatttttcagaatgaatcatctggaggaagaacagttgcatctggaacccaacat
ttagatgctgggaattcagtcaaggagcaggtattaagagcaaaaactgtagatgggagg
ttggagagaacagaaagtgtttcacttgtgaaatctgatccagtgcatgcaaaagttaag
ggtggctcatcagtgaatggttcagatattcagcaatccatgccctcagctgcttcacat
acaggaacatccagatcaggggaaaatcaaagaccggtggatgaatccacaaatagaaca
ttggatgaaagcacagtgaaagtttcttcaagggcatcaactgaatccgagttgagagct
acaggaaagcgatcactgccctccggctccctcacaaagcaaccaaaacttgatgttgca
aaagatgatagtaaatctggaaaaggcgttggccgaacttctggctcttccaccagtgac
agagatctccctgctcaccagttagagggcaggcaaagtggggtgaccaatgtttcttcc
gcaggtacggctgatggtagcgtgggtaaaggctcaacccaatcgacaagaacatcatta
gatatccatggtagtgaatctaaaccagagtctggatcttccaagtctgctgatttgagg
ctttctgcagtcaaagatgatggtaatgaagtttctgatagggccccctcttctcgacca
attcattctcccaggcacgataattctgccactataaagtctggtgataaacagcagaaa
agaaccagtcctgctgaagagccagaaagagtaaataaacggcggaaaggggacactgaa
gtgagagatttcgaaggtgaagttagattctctgacaaagagaggtccatggatcctcga
ttagacaaaagtcatgctgtggatctagacaaatcaggaacagatgaacaaggtatcagt
agggccactgataagccttcagataggttaaaagataagggaagtgaaagatatgaaagg
gaccaccgggaaagattggaacgtcctgataagtcccgtggagatgaaatgatagcagag
aaatcaagagataggtcaatggagagacatggaagggagcgttcagttgaaagagtgcaa
gagaggagcagtgaaagaagttttgatagactcactgataaagttaaggatgaaagaaat
aaggatgacagaggtaagatgcgctacagtgaaacatctgtagaaaaatctcatgcagat
gatcggttccatgggcaaagcttgcctcccccaccacccttacctcctcatatggtcccc
caatctgttactgctagtagaagggatgaagatgctgatagacggtttggaactgctaga
catgctcaaaggctttctccaagacatgaagagaaagaacgaaggcgatctgaggagatc
tcacaagatgatgctaaacgcaggagggaagatgatattcgagagagaaagcgagaagaa
cgggaaggtttatcaataaaggtagaggacagagagagggagaaagcaagtcttttgaaa
gaggatatggatccaagtgccgcctctaagagacggaaactcaaaagggagcacatgcca
tcaggggaagctggggagtatacgccagcagccccaccacctcctccccctgctattagc
atgtcacaagcatatgatggaagagaaagaggagatagaaaaggggccatggtccagcgt
gcaggttacttagatgaaccaggcctgaggattcatggtaaagaagtaactggcaagatg
gcccgccgagatgctgaccagatgtatgaccgagagtgggatgatgagaagaggcagaga
gctgaacaaaagcggaggcatcggaaatag

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