KEGG   Vitis vinifera (wine grape): 100254354
Entry
100254354         CDS       T01084                                 
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 3 isoform X1
  KO
K03255  protein TIF31
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03012 Translation factors [BR:vvi03012]
    100254354
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100254354
SSDB
Motif
Pfam: TPR_12 eIF3_p135 TPR_10 TPR_NPHP3 CLU_N TPR_2 TPR_9 PAM2 TPR_MalT TPR_8 CLU DUF5969 TPR_1
Other DBs
NCBI-GeneID: 100254354
NCBI-ProteinID: XP_003632816
UniProt: F6HXG8 A0ABY9CHE9
LinkDB
Position
9:join(7557212..7557281,7557383..7557444,7557558..7557650,7557780..7557852,7559127..7559417,7559517..7559581,7560037..7560168,7560280..7560321,7560419..7560952,7561272..7561426,7563066..7563558,7563796..7563858,7563951..7564052,7564284..7564601,7564677..7564769,7564921..7565022,7565114..7565218,7565686..7565819,7566049..7566232,7566329..7566460,7566850..7566962,7567051..7567132,7567365..7569035)
AA seq 1702 aa
MAPRSGRGKGNKGKTEKKKKEEKVVPSVLDITVITPYESQVILKGISTDKILDVKKLLAV
NVETCHLTNYSLSHEVKGQRLNDKVEVVSLKPCLLRMVEEDYTEEAHAVAHVRRLMDIVA
CTTFFSKPRNTRSPPAATEARSRKTWNQNLDGELRSGSAVEPSISERYDMAAIHPNPKLS
DFYEFFALSHLSPPILNLRRSDRKDGGEKQESDYFEIQIKICNGKLIQVAASVKGFCTRG
KQFLQSHSLVDLLQQLSRAFANAYESLMKAFVEHNKFGNLPYGFRANTWLVPPSIAENPS
SFPSLPSEDECWGGNGGGQGRNGKHDLRPWATDFAILASLPCKTEEERVVRDRKAFLLHN
LFVDVSIVKAVSSIRHVMDSNVNSKDTSNCSSGSIMHKDHVGDLCITVKWDSADARSKSE
GKVNGSYSPGMSAKEIAQRNLLKGVTADESVVVHDTSSLGVVIVRHCGYTATVQVAGDVQ
KGKLMAQDIEIDDQPDGGANSLNVNSLRVLLHKSCSAESTGGCHSPQATVDDQETSRCLI
RSVIEQSLAKLEEEPAVSERSIRWELGSCWVQHLQKQETPADNSSKDRKDENGTELAVKG
LGKRFKLLKKREKKLTMSGTDVKEGNDSRPSSINGGIDGGESNSEAELKKLISKEAYLRL
KETGTGLHLKSADKLIEMAHKYYDEIALPKLVTDFGSLELSPVDGRTLTDFMHLRGLQMR
SLGRVVELAEKLPHIQSLCIHEMVTRAFKHVLKAVVRSVENVADLPAAIASSLNFLLGCC
TMEDSDQNSRHENVVKLQWLKTFLTRRFGWTLKDEFKHLRKFSILRGLCQKVGLELVPRD
YDMECPNPFRKHDIISMVPVCKHVGCSSADGRTLLESSKIALDKGKLEDAVNYGTKALAK
MIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD
LSVFYYRLQHIELALKYVNRALYLLQFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYL
HEALKCNQRLLGVDHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGPEDLRT
QDAAAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYISPDQDSKGGDAQR
KQRRAKVVHVSDKFHQAQTDAMTKDIVLHDNREKTTAVVEENTEEMKLDTVPPKEPTDNG
NTRTEQTVTLIESIQETISDEGWQEANSKGRSGNISSRRISRRRPELAKLNVSRSEYSNF
RESSHRREINTSAQRTTPKTVSTHSAPLKQRKVISPCSGEDLNKPQAKTPVSKISSAPAT
LTAMASKSVSYKEVAVAPPGTILKPLLEKVEEKTEEKTEIQMSNTLETSKGEESDKVMVE
VEEAVPDDEDTKGSADGSVTESEKPASEPEEVSSPDDQEKPMETNGSKLSAAAPPFNPGA
HSLIHTLSSAAVTSVYDVTASQGMLAEPMELPPVAARVPCGPRSPLYYRTNNSFRIKNGY
LKYQNPVIGRSGFGPSRIMNPHAPEFVPRRAWQTKTANADSQAPPELDSFVETNKELPTE
EENLDKKATNKAKDGRKKSTSDSEKSELARQILLSFIVKSVQHNLDPPSEAAVNEKHEYT
GSSSEAIANDTAIITILYGNEGKTNLVSESSDSQQAKPDVNANKNGDGEGFTVVTKRRRN
RQHFTNGVNGLYNQQSICASVR
NT seq 5109 nt   +upstreamnt  +downstreamnt
atggctccaaggtcaggtagaggcaaaggaaataagggtaaaacagagaagaagaagaag
gaggaaaaagttgtgcccagtgttcttgacataactgtcatcaccccatatgaatcacaa
gtcatactcaagggcatctcaactgataaaatacttgatgtgaaaaagctgctagctgtc
aatgtggaaacatgtcatctcaccaactattctttatctcatgaggttaagggacagaga
ttgaatgataaagtagaggttgtatctctgaagccatgcttgctgaggatggttgaagag
gactatacagaggaagcccatgcagtagcacatgtacgtaggctcatggacatagttgca
tgcaccaccttcttcagcaaacccaggaacaccagatcaccacctgcagccacagaagct
cggagcaggaagacctggaaccagaacctggatggcgagctcagaagcgggtctgcggtg
gagccttctatctcagagagatatgacatggctgccattcaccccaacccaaaactctct
gatttctatgagttctttgctttgtctcacctctctccccctattctaaatttgagaaga
agcgacaggaaagatggaggagagaagcaagagagtgactattttgagattcagattaag
atctgcaacggcaagctaatacaagtggctgcttcagtgaaagggttctgcaccagggga
aagcaatttttacaaagccactccctggtggatcttctgcaacagctcagccgagctttt
gccaatgcatatgaatccttaatgaaagcttttgtagagcacaataagtttggtaatctt
ccatatggatttcgtgcaaacacatggctggtccctccatctattgctgaaaatccttca
agtttcccatccctaccatcagaggatgagtgttggggaggcaatggtgggggccaggga
agaaatggtaaacatgatcttcggccatgggcaacggattttgcaatattggctagtctt
ccttgcaaaactgaggaggagagggtggtccgagacaggaaggcttttttgcttcataat
ctatttgttgatgtttctatcgttaaagctgtttcatcaattcgccatgtcatggattct
aatgtgaattcaaaagacacatcaaactgttcttcaggctcaatcatgcacaaggatcat
gtgggggacttgtgtattacagtaaagtgggattcagcagatgcaaggtcgaagtctgaa
gggaaagttaatggcagttactcacctggcatgtctgctaaagaaattgctcaaaggaat
ttacttaaaggtgtgactgcagatgaaagtgtagttgttcatgatacttcctcattgggt
gtcgtcattgtaagacactgtggatacactgcaactgtacaagttgctggtgatgtgcag
aagggaaaactcatggctcaagatattgaaattgatgatcaaccagatgggggagccaat
tctctcaatgttaacagtttacgggttctgcttcacaagtcatgtagtgctgaatccact
ggaggatgtcactcacctcaggccactgtggatgatcaagaaacttctagatgtctgatc
cggagtgtaattgaacagagcttggctaagttagaagaggagcctgctgtttctgaaagg
tctatcagatgggaactcggatcttgttgggtgcagcatctacagaaacaggaaactcca
gctgataacagttctaaagaccgcaaggatgaaaatgggactgaacttgctgtcaaaggt
cttgggaagcgatttaaactgttgaagaagagggaaaagaaactgactatgagtggcaca
gatgttaaggaaggaaatgattctcggcccagcagcataaatggtggaatagatggaggg
gagtccaacagtgaggctgaattgaagaaattaattagcaaggaagcctacttgcgtttg
aaagaaacgggaactggtcttcatctaaagtctgccgacaaacttattgagatggcacac
aagtattatgatgaaatcgctttaccaaagctggtgacggactttggatcacttgagctt
tctcctgttgatggccgcacgctaacggattttatgcatttaagaggactacagatgcgc
tctttgggtcgtgtggtggaacttgctgagaaacttcctcacatacagtcactctgtatt
catgagatggttactcgagcattcaagcatgtactcaaagcagttgttcgttctgttgag
aatgttgcagatttgcctgcagcaatagcatcatccttaaatttcttgctgggatgctgc
accatggaagacagtgaccaaaactcgagacatgaaaatgttgtcaaattacagtggtta
aaaacttttcttaccagaagattcggttggacactaaaagatgagtttaaacacttgagg
aagttctcaattcttcgaggactttgccaaaaggttgggttggagttggttccaagagat
tatgacatggaatgcccaaaccccttcaggaaacatgacattatcagcatggttcctgtg
tgtaagcatgtagggtgctcttctgcagatggtcggactttattggagtcatcgaagatt
gcgcttgataaaggaaagctagaggatgctgttaactatggaacaaaggcactggcaaag
atgatagctgtatgtggtccatatcatcgaaccactgcaagtgcttacagtcttctagca
gttgttctttaccacactggggattttaatcaggcaactatatatcaacagaaggctttg
gatatcaatgagagggaacttgggcttgaccatcctgatacaatgaaaagctatggagat
ctttcagttttttactatcgtctccaacacattgaattggctctgaagtatgtcaaccgc
gctttatatcttcttcagtttacatgtggactgtctcaccccaacacagctgcaacatat
attaatgtggctatgatggaagagggcatgggaaatgttcatgttgctctcagatacttg
catgaagcacttaagtgcaatcaaagattactaggagtggatcacatacagactgctgcc
agctatcatgccatagccatagcactgtctctgatggaagcatattctctcagtgtgcaa
catgagcagactacactccagatactccaagcaaaacttgggccagaggatctccgtact
caggatgctgctgcatggcttgaatattttgaatcaaaagctttagagcagcaagaagca
gcaagaaatggaactccaaagccagatgcatctattgcaagcaaaggccaccttagtgta
tcagatctccttgattacattagtccggatcaagattcaaaggggggagatgcccagaga
aaacagcggcgtgcaaaggtggtgcatgttagtgataagttccatcaagctcagactgat
gcaatgaccaaggacattgttcttcatgataacagagagaaaactacagctgtggtagaa
gaaaatactgaagaaatgaagttggacacagttcctcccaaagaaccaacagacaatggt
aacactagaaccgagcagacagttacattaattgaaagtatccaagaaacaatctcagat
gagggatggcaagaagccaattcaaaggggcgttctggaaacatttctagtcggagaatt
tccaggagaaggccagagcttgctaagctaaacgtgagcaggtctgagtactctaatttt
agagagagcagccacagacgggaaatcaatacatctgcccaaagaacaacccccaaaact
gtttcaactcattcagctccattgaagcaacgaaaggttattagcccatgttctggagag
gatttgaataaaccgcaggcgaaaactccagtttccaaaatttcctcagcaccggcaact
ctcactgccatggcttcaaaatctgtatcttacaaggaagttgctgtggcacctccaggt
acgatattaaaaccattactggagaaggtggaagaaaaaactgaagagaaaactgaaatc
cagatgtctaacactcttgagacatcaaagggggaagaaagcgacaaggtcatggtagaa
gtagaagaagcagtaccagatgatgaagacacaaaaggtagtgccgatggaagtgtaact
gagtcagagaaacctgcctcagaacctgaagaagtgtcctctccagatgatcaggaaaag
cccatggaaacaaatgggagtaagctttcagctgcagctccaccgttcaatccaggtgca
cactctctgattcacaccctaagctcagctgctgtcactagtgtttatgatgtaacagcc
agccaaggcatgcttgctgagcctatggaactccctcctgttgctgcaagagttccttgt
ggaccaagatcacccctctattatcgaacaaataactctttccgcatcaaaaacggatat
ttgaaataccaaaaccctgtcatcggacgaagcggatttgggccttcaagaatcatgaac
ccacatgcaccagagtttgttcctagaagagcttggcaaacaaaaactgcaaatgcagat
tcacaagctccacctgagttggattcttttgttgaaaccaataaagagcttcccacagaa
gaggagaatcttgataagaaggccaccaataaagccaaagatggaaggaaaaagagtacc
tctgattcggagaagtcggagctggcaaggcagatactgcttagcttcattgtaaagtca
gtccagcataacctggatcctccaagtgaggctgcagtcaatgagaagcacgaatacact
ggaagttcttcagaagccattgcaaacgacactgcaattataacaatcctttacgggaat
gaggggaaaaccaacttagtgtctgaatccagtgacagtcagcaggcaaaaccagatgta
aatgcgaacaagaacggtgatggtgagggatttacagtagtcacaaagcggagaagaaat
aggcaacatttcacaaacggagtaaatgggctgtacaatcagcaatcaatctgcgcttcg
gtccgctga

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