Vitis vinifera (wine grape): 100254377
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Entry
100254377 CDS
T01084
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi00040
Pentose and glucuronate interconversions
vvi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100254377
Enzymes [BR:
vvi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100254377
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
100254377
NCBI-ProteinID:
XP_059598802
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Position
14:join(29077808..29078019,29078157..29078808,29078905..29079147,29079236..29079460)
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AA seq
443 aa
AA seq
DB search
MIMKMGAYKFSSLLLLSFFAFAVLAPSIRAHIGEFDEVWQKRAEEAQKAALEAYQPNPEE
VTNQFNKNVRKSMQGTNTTRRNLRSNNGPCMATNPIDRCWRCKQDWAKNRKKLADCVLGF
GRRTTGGKDGEFYVVTDASDNDMIDPKPGTLRHAVIQKEPLWIIFARDMIIRLKQELIMA
GNKTIDGRGANVHIAYGCGITIQFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASD
GDGVSIFGSSNVWVDHLSMSNCKDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQG
DKIMQVTVAFNHYGRGLVQRMPRCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQGNRFI
APPNMACKEVTKRDYASPDEWKSWTWISQGDLLQNGAFFVQSGDPKKKHPFTRYDMIKAK
PGTFVNRLTRFSGSLGCKVNQPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgatcatgaaaatgggggcatataagttcagtagtcttttgttgttgtctttctttgca
tttgctgtgttggctccgtcgattcgagcccacatcggagaatttgatgaggtgtggcag
aagcgagctgaggaggcccagaaggctgcattggaggcctatcaaccgaacccggaagag
gtcaccaaccagttcaacaagaatgtccgcaagtccatgcagggaaccaacacaacgagg
aggaacttgaggagtaacaatggtccatgcatggccacgaaccctatcgacaggtgctgg
agatgcaagcaggactgggctaaaaaccgaaagaagctagctgactgtgtgctggggttc
gggcgcaggactacaggaggaaaggatggagaattctatgtggtaactgatgcctcagac
aatgacatgatcgacccaaaacccggtactcttcgccatgctgtgatccagaaggagcca
ctgtggatcatatttgcccgcgacatgataataaggttgaaacaggagctgatcatggct
ggcaacaagaccatcgatggccgtggggctaatgttcacattgcatatggttgtggcatt
actatacagtttgtgaagaatatcatcatccataacctccatatacatgacattgttcct
gctcaaggtgggatgattagagactctgtagatcattatggcctcagaactgccagtgat
ggagatggggtttcgatattcggctcatccaacgtctgggtggatcatctctccatgtcc
aactgcaaggatgggcttgttgatgtgatcatggcatccacagccatcaccatttcaaac
tgccatttcactaatcacaatgaggtgatgctgtttggtggcagcaataatttccagggc
gataagatcatgcaagtgacagtggcattcaaccattatggaagaggactagtccagaga
atgccaagatgcagatatggcttcgtccatgttgtcaacaacgattacactcactggctc
atgtatgccattggtggtagccagaaccccaccatcataagccaggggaaccggttcatc
gcccctccaaatatggcttgcaaggaggtaaccaagagggactatgcaagcccagatgag
tggaaatcttggacatggatctcacaaggggatctgctacaaaacggagcattctttgtt
cagtctggagaccctaaaaagaagcatccattcaccaggtacgacatgataaaggcgaag
cctggcacatttgttaacaggctcactcgcttttcggggtcgctgggctgcaaggtgaac
caaccatgttag
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