Vitis vinifera (wine grape): 100254711
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Entry
100254711 CDS
T01084
Name
(RefSeq) homeobox-leucine zipper protein ROC8
KO
K09338
homeobox-leucine zipper protein
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vvi03000
]
100254711
Transcription factors [BR:
vvi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
100254711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
START
Homeodomain
Homeobox_KN
XRCC4_CC
Motif
Other DBs
NCBI-GeneID:
100254711
NCBI-ProteinID:
XP_059592554
LinkDB
All DBs
Position
4:join(11160768..11160883,11161396..11161513,11161607..11161798,11161896..11162399,11162515..11162616,11162705..11162911,11170314..11170494,11170581..11170849,11170950..11171039,11188036..11188422)
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AA seq
721 aa
AA seq
DB search
MEFRTGGNGSGGDQDGPNPRRGRKVYNRHTPQQIQRLEAFFKDCPHPDEAQRRQLGRELG
LESRQIKFWFQNKRTQTKTQHERADNTALRAENERIQCENLAIREALKNVICPSCGGPPF
GEEERQRNIEKLQLENAQLKEELPPNFCQHEKVSNLLAKYIGKPITQMHLLPPALGSSLD
FSPGSFPSQETGGLSIPTVGPALGLELAPVDVCNASVMYQFKGFPDMEKTLMTETAAGAM
DELIRLVRINEPLWVKSATNEKYVLHHDSYERIFPKATHFKSSNARIESSKESVVVAMNG
MQLVNMFLDPNKYVDLFPTIVTKASTIQVLEAGIIGSRSGSLQLMYEQMHILSPLVAPRE
FYFLRYCQQIELGVWVMVDVSYDYSKDGQPNSLRFWKLPSGCMIQDLPDGCSKVTWVEHV
EVDDKSLTHRLYRDLVSGSLAFGAERMVGTLQRMCERLAYLADENTPTRDLAGVISLPEG
RRSIMKLGHRMVKDFCGVLSMSGKLDFPQLSEVDTSGVRVSVRKSTEPGQPGGLIVSAAT
SLWLPMQCQTIFDFIRDEKMRPQWDVLSSGNPVHEIAHIANGVNPGNCTSIIRPFVPTEN
NMLMLQESCVEPLGGLVVYAPIDIPAINVAIRGEESGNIPILPSGFIVSGDGRSDSGAGC
TSDGNIMGSGGSLLTVAFQVLVCGPAAPQQQLNMESVATVNTLISSTVQKIKIALNCSGL
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcggaccggaggaaatggctccggtggtgatcaagatggtcccaatcctcga
agagggaggaaagtgtacaatcgccacactcctcagcagattcagcgccttgaagcgttt
ttcaaggactgcccccatccagatgaagcccagaggcgtcagttgggcagggaattgggg
cttgagtcccgccagatcaagttttggtttcagaacaagcgtactcaaacaaagactcaa
catgagcgcgcagataacactgcccttcgggccgagaatgaaaggatccaatgtgaaaac
cttgcaatcagagaggcactgaagaatgtgatctgcccatcgtgtgggggtccacccttc
ggggaagaagaacggcagcgtaacatagagaagcttcagcttgaaaacgcccaattgaaa
gaagagctcccacccaatttttgtcagcatgaaaaggtatcaaatcttcttgccaagtac
atagggaaacccattacacaaatgcatttgctgccacctgcccttggatcttctttggat
ttttcaccaggaagtttcccaagccaagagacaggaggcctttccatccccacagtaggc
cctgccctaggccttgaacttgctcccgtggatgtttgcaatgcttcagtgatgtatcaa
tttaagggattcccagatatggaaaagacgctcatgactgagactgctgccggtgccatg
gatgaattaatcaggcttgtgcgtatcaatgagcctttgtgggtcaagtccgccactaat
gaaaaatatgttcttcaccatgacagctatgaaagaattttccccaaggctactcacttc
aaaagttcaaatgctcgaattgaatcatcaaaggaatcagtcgtggtggccatgaatgga
atgcagctggtcaacatgtttctggatccaaataaatatgtcgatctctttcccacaatc
gttaccaaagcaagcacaattcaagttcttgaggctggaataattggaagccggagtggt
tccttgcaattgatgtatgaacagatgcatattctttcacctcttgtagcacctagagaa
ttctactttcttcgttattgccagcaaattgagctaggcgtgtgggtgatggtggatgtg
tcctatgattactccaaagatggccaaccaaactctttgcgattttggaaacttccttct
ggatgcatgattcaagacttgcctgatggctgctccaaggttacttgggtagaacatgtt
gaagtggatgacaaaagtctaacgcatcggctctatagagatcttgtctccggtagctta
gccttcggggcagaaagaatggtcggtactcttcaaaggatgtgcgagaggctcgcttac
ttggcagatgaaaatacaccgactcgtgatcttgcaggagtgattagcttgcctgaaggg
aggagaagtataatgaagcttggtcacaggatggtgaaagatttttgtggggttttaagc
atgtctggaaaactagactttcctcagttatctgaagtggacactagcggtgtcagagtc
tctgttcgcaagagcacagaacccggccaacctggtggcctgattgtcagcgctgcgacc
tccctttggctccccatgcaatgtcagactatatttgatttcatcagagatgagaaaatg
cgacctcagtgggacgttctgtccagtggaaatccagtgcatgagattgcacatatcgca
aatggagttaatccagggaactgtacaagtatcattcggccttttgtccccaccgagaac
aacatgctcatgcttcaagagagctgcgtggagcctctgggaggcttggtggtctatgcc
cccattgacataccggccatcaacgttgcaataaggggagaggagtctggaaacataccc
attcttccatctgggttcatagtctctggagatggccgttccgactcaggagccggatgt
acatctgacgggaatatcatggggtcgggcggttcccttcttacagtggctttccaagta
ctggtttgtggccctgcggctccgcagcagcagctgaacatggagtcggtcgccactgtc
aatactcttattagctccaccgttcaaaaaattaagattgccttgaattgttctggtttg
gattga
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