Vitis vinifera (wine grape): 100254758
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Entry
100254758 CDS
T01084
Name
(RefSeq) replication protein A 32 kDa subunit B isoform X2
KO
K10739
replication factor A2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
vvi03440
Homologous recombination
vvi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100254758
03420 Nucleotide excision repair
100254758
03430 Mismatch repair
100254758
03440 Homologous recombination
100254758
03460 Fanconi anemia pathway
100254758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvi03032
]
100254758
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100254758
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100254758
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100254758
MMR (mismatch excision repair)
100254758
DSBR (double strand breaks repair)
HR (homologous recombination)
100254758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPA_C
tRNA_anti-codon
RMI2
HTH_24
TrmB
GntR
NirdL-like_HTH
HTH_27
Motif
Other DBs
NCBI-GeneID:
100254758
NCBI-ProteinID:
XP_002268721
LinkDB
All DBs
Position
11:complement(join(18652845..18652929,18653017..18653085,18654961..18655037,18655122..18655205,18655295..18655373,18657363..18657440,18657583..18657624,18657724..18657821,18657897..18658007,18658597..18658701))
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AA seq
275 aa
AA seq
DB search
MYSHSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDK
SNFLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILD
GMYVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRAGGPTQSHV
TNPAIGTPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQL
NVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtattcccacagtcaattcgacggcaacgccgccttctctggcgggggattcatgccc
tcacaggccactcaggccgccgaacctggtttttctcctgccagaaatcgggatacacaa
gcgttgcttcccttgaccgtgaagcagataagtgaagcttttctctcaagcgatgataaa
tccaattttctcattgatggtgtcgaagtgaacaatgtcacacttgtggggatggtattc
aacaaagctgaaagggttactgatgttggttttatgctggatgatggaacagggcgtatt
gactgtaacagatgggtcaatgaagctgtagacacaaaggaaatggaaggaattctagat
ggcatgtatgttcgagttcatggacacttgaagggttttcagggtaaaaggcatttaaat
gtcttctctattaggcctgtgactgactttaatgagattgccagccacttcattgagtgt
atctatgtgcatatctacaacactaaatcacgggctggtggccctactcagtcccatgtt
acaaatccggccattggtacccctttaaagggttaccaagcttctcaaccaaatcaattc
tctgggcaatatggtgctggacttaagggcgttgatcaactggtcatagattatttgcag
caacctcagtccctggctcgagaccagggggtaggccgggatgagcttgcccaacagcta
aatgttccagtcgataaaatcatggaatctattagatcactcgaagaggaaggcctgatt
tactcaacaattgatgaatggcattacaagtcaactggcaatggttga
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