Vitis vinifera (wine grape): 100255597
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Entry
100255597 CDS
T01084
Name
(RefSeq) serine/arginine-rich splicing factor RS41 isoform X2
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100255597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100255597
Spliceosome [BR:
vvi03041
]
Common components
Common spliceosomal components
SR proteins
100255597
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
RRM_Nup35
DotY
DUF2129
Motif
Other DBs
NCBI-GeneID:
100255597
NCBI-ProteinID:
XP_002279907
LinkDB
All DBs
Position
16:join(20686397,20688163..20688273,20689871..20689983,20690096..20690331,20690510..20691454,20691572..20691608)
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AA seq
480 aa
AA seq
DB search
MKMRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRT
GFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDP
YGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPD
GRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRRD
RAIPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKIM
PDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQS
PRQRERTKPDYGHERSVSPEQREKANPDYGRGPSRSSPRREYDRGPSQSPQQGERALPDY
SRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaggcccattttctgtggtaactttgattacgatgcaagacagtctgatttg
gagcgacttttcagaagatatgggaaggttgatagagttgatatgaagactggatttgcc
tttatatatatggaggatgaaagggatgctgaggatgcaattcgaggacttgatagaaca
ggctttggaagaaaagggcgcaggcttcgtgtcgagtggacaaagcaagaacgtggcatt
agaaggcctagtggttctagaagatcttcaaccaatttaagacctgcaaagacactgttc
gttattaattttgatccatataatactaggacaagggacttggagagacactttgatcca
tatgggaaaatattaaacataaggatcagaaggaattttgcatttattcagtatgaatca
caagaggatgccactagagcattggaggctacaaacatgagcaagttgatggatcgagtt
atttcggtggaatatgcagttcgagatgatgacgaaaggagaaatggatatagccctgat
ggacggaggcgcgataagtcatctgagagaagctatgacaaaggacgatccttgagtccc
taccggagggagagaggtagtcctgattatggtcgtggctctagcccaagtgcctacaga
agagagagagccagtcctgattatggccgtgaccctagccctagtccacgtcgaagagat
agggctatccctgatcatggccgtagtcgtagtcctagtcatcatcgaagagagaggact
agccatgattcagctcgtggccccagccggagtccatatcgaagtgaaagaagtgacagg
gccattcctgattatggccgcggtcgcagtccaagtcctggacggagagagaagattatg
cctgactatccggacagacccagtctgagtcctgagcgaaaagagaagacaggacgatca
gagaaggctattcctgattatggccgtggagctagcccaagttcccctcgtcgagagagg
actaactctgattatgttcgtgccaatagccgcagccgcagtcgcagccagagccaaagt
ccacgacaaagagagaggactaagcctgattatggccatgaaaggagtgtgagtcctgaa
caaagagagaaggccaatcctgattatgggcgtggtcctagccgaagttccccacgtaga
gagtatgaccgtggtcccagccaaagtccccagcaaggtgagagggcccttcctgattat
agccgtggccccagcgacagtccatatcaaagagagagtatcagtcctgactatgaccgt
ggtcccagcccaaattccaagcgtgaagagagggacagtcccaattatggtggatctgca
agccccatgaatgggagataccggagtcgttcacccccggcacgtgaaagatctcgatct
tag
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