Vitis vinifera (wine grape): 100255600
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Entry
100255600 CDS
T01084
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100255600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100255600
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100255600
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100255600
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100255600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
100255600
NCBI-ProteinID:
XP_010655357
UniProt:
A0ABY9CP67
LinkDB
All DBs
Position
10:complement(join(460932..460976,461794..462342,462441..463412,464089..464922,467982..468245,468356..468457,470341..470715))
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AA seq
1046 aa
AA seq
DB search
MDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNEISQKPLVPIVDRFKALLKQRE
DELRVLSGDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKEHADGIADAIC
ARIVEVSVEQKLPSLYLLDSIVKNIGRDYIKHFSSRLPEVFCEAYRQVHPNLYTAMRHLF
GTWSAVFPPSVLRKIEAQLQFSPTLNNQSSGMASLRASESPRPTHSIHVNPKYLEARHQF
EHSPVDSNMQHSRGTSSTLKVYGQKPAIGYDEYDSGHTEVISSQARAQRLNSTGSVGRTP
FALGADKLLPSSTARVAKSTSPRIGTAGSSSPPAEKFSMDNSPRRVVERASPSHRGFEYG
LVRSMGRDEETSDRQRKHWSNDRFETSAAHNLSNGRERQGLRALIDAYGNDRGQRTLNDK
PPKVGHLDMNGTDNKVPKKAWQNTEEEEYDWEDMNPTLANRRQCNNILQSSVSPFGSFRT
RPGSGALGAAPLESDFNRSKWSGQAQLSMVDDSPVIAEDVVPTTSLGRGSISKPGFGNET
KFHGSHYPQESWNLVHRVPQSSQHNRNAKGRGKNFNTPFLGSGISSSAAETISPLISNIP
DADAQLRRLPTVASRMGSSSLNSMNVEVQSAAAPASTGMWPPVNVHKTHLPPLLSNLPQT
KQIRNQFNLMNATTAVVNQDPNKSLFLPELDSKLPQMANRQAGSIPLNGKNQTQVTRLQP
QFLPQETHGNFVPSTTAPVSSYSVAPPLNPGYTPQGHAAATSTILLNPVPGVHSSIPIHN
ISNSSVHFQGGALPPLPPGPPPATSQMINIPQNTGPIVSNQQPGSALSGLISSLMAQGLI
SLAKQPTVQDSVGIEFNVDLLKVRHESAISALYGDMSRQCTTCGLRFKCQEEHSSHMDWH
VTKNRISKNRKQKPSRKWFVSASMWLSSAEALGTDAVPGFLPTETIAEKKDDEELAVPAD
EDQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAPEGSAAGMDRSQLGPIVHAKCRSESN
VVSPEDFGQDEGGNMEEGSKRKRMRR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggacggagacaggttcgtagtatcggcaagggaaaaccctagaacgctggggtttgcc
ccggagcgcggtcccggaggcagcgctaccgccaccgcgaagccaatgtccaatgaaatc
tcccaaaagccactggtcccgatcgtcgaccgattcaaggctctgctaaagcagcgggag
gacgaacttagggttttgtctggagacgacgtcccgccgccgactactgaggaaattgtg
cggctttacgagattgtgctatcggaactcatcttcaattcgaaacccatcattaccgat
ctcacgattattgccggagatcacaaggagcacgctgatggtattgccgatgcaatttgt
gctcgaattgtcgaggtctcagttgagcaaaaactaccttctttatatctgttggatagt
attgtcaagaacattggtcgggactatataaagcacttctcctcccgtctacctgaggtt
ttctgtgaggcatacaggcaagttcaccctaacctttatactgccatgcgacatctgttt
ggcacttggtctgcggtgttccccccatctgtcctacgtaagattgaagctcaactgcaa
ttttcacccacactaaacaaccaatcatcaggcatggcttcgttgagagcctctgaatct
cctcggccaactcatagtatacatgtcaatccaaagtacttggaagcaagacatcagttt
gaacattcacccgttgatagtaacatgcagcattcacgaggaacttcctcaactctaaag
gtttatgggcaaaagcctgccattggatatgatgagtatgattctggtcatacagaagtt
atatcctcacaagccagagcccaaaggttgaactcaactggaagtgtgggccggacacca
tttgctcttggcgctgataagctgcttccctcttcaactgctagagttgcaaaatcgacc
tctccaagaattggcactgctgggtcttcatctcctccagctgagaagttttcaatggat
aattctcccagaagagttgttgaaagagcttctccatctcatcgtggatttgaatatgga
cttgtcagatcgatgggcagggatgaggagacaagtgacaggcagagaaaacactggtcc
aatgataggtttgaaacttctgctgcgcacaaccttagtaatggacgtgagcgtcaagga
ctgagagcgttaattgatgcatatggaaatgacagagggcaaagaactttaaatgataag
cctccaaaggttggacacctggatatgaatggcacagacaataaggtgcctaagaaagca
tggcagaatactgaagaggaagagtatgattgggaagatatgaacccaactttagccaac
cgcagacagtgtaataatatcttgcaatcatcagtttcaccttttggaagctttaggaca
agacctggctctggggcacttggtgcggccccactggagtctgatttcaataggagcaaa
tggtctggtcaggcacagctttctatggtggatgattctcctgttattgctgaagatgta
gttcctaccaccagtttaggccgaggatcaataagtaagcctggatttggaaatgaaaca
aaatttcatggttctcactatcctcaagaatcctggaatttggtgcaccgtgtacctcag
tcttcacaacacaaccgtaatgccaaaggaagaggaaagaatttcaatacaccctttttg
gggagtggaatatcgtcttcagctgccgagacaatttctcctcttattagtaatattcca
gatgctgatgcacaacttcgtagactccctactgttgcatcaagaatgggttcttcaagt
ctcaactctatgaatgtggaggttcagtcagctgctgcacctgcatcaactggaatgtgg
cctccagtaaatgtgcacaaaactcacctccctcctttactgtccaatcttccacaaaca
aaacaaattaggaatcagttcaatttgatgaatgctactactgcagttgtgaatcaagat
ccaaataagtctttgtttttacctgagttagatagtaagctgcctcaaatggctaatcgg
caggccggatcaattcctttaaatgggaaaaaccagacacaagtcactcgtttacaacca
cagtttttgccacaggagactcatggaaattttgttccatctaccacagctcctgtgtca
tcatattcagtggcacctcccttgaaccctggatataccccacaagggcatgctgctgct
acaagtaccattttgctgaatccagtacctggtgtccattcgtctattccaatccacaat
atctcaaacagctctgtgcattttcaggggggagccttgccacctctacccccaggtcct
cctcctgccacatcacaaatgataaatatacctcagaatacaggtcccattgtctctaac
caacaacctggaagtgcattatcgggtctgattagttctctcatggcccaaggtttgatc
tcattggcaaaacaacccacggttcaggattctgttggaattgagtttaatgttgacctc
cttaaggtgcgccatgagtctgcaataagtgctctatatggtgatatgtcaagacagtgc
acaacatgtggtcttcgattcaagtgccaagaagagcacagtagtcatatggattggcat
gtgaccaagaaccggatatctaaaaaccgcaaacagaagccttctcgcaaatggtttgtg
agtgccagtatgtggcttagtagtgcagaggcattgggcactgatgcagttcctgggttt
ttgcccactgagacaattgcggaaaagaaggatgatgaagaactggctgttcctgctgat
gaggatcagaatgtttgtgcattgtgtggagagccttttgatgatttttatagtgacgag
actgaggaatggatgtacaaaggcgctgtctacttgaatgcaccggagggatcagcagca
ggcatggataggtcacagttaggtcccatagtgcatgccaaatgcagatctgagtctaat
gtggtttcccctgaagattttggacaagatgaagggggaaatatggaagagggtagtaag
agaaaaaggatgcgaagatag
DBGET
integrated database retrieval system
